Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq388 105 3e-18 >seq388 Length=3990105 Score = 105 bits (116), Expect = 3e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 |||||| || |||| |||||| | || | ||| ||||| || | || ||| |||| || Sbjct 2997312 ATGGCGCTGCCTCCATGCCATGCGCTCTGCCAGTTCTACGTGGTGGATGGTGAGCTGTCC 2997371 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | || ||| |||| | |||||| | ||||||| || || |||||||||||| Sbjct 2997372 TGCCAGCTCTACCAGAGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATTGCCAGC 2997431 Query 52230 TATTCCTTGCTGACGCATCTGATTGC 52255 ||| || |||| ||| || ||||||| Sbjct 2997432 TATGCCCTGCTCACGTATATGATTGC 2997457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189981437457500