Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031226.1 Length=53717 Score E Sequences producing significant alignments: (Bits) Value seq46163 136 1e-27 >seq46163 Length=1271 Score = 136 bits (150), Expect = 1e-27 Identities = 288/424 (68%), Gaps = 27/424 (6%) Strand=Plus/Plus Query 18790 CACCCGATGAGCTTTCGTACGGCCTACGGCTACAAGTACTCGGAGAACGGTTGGCGAATG 18849 ||||||||||| || || || || |||||| | | | || |||||||||||||| ||| Sbjct 721 CACCCGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATG 780 Query 18850 TGCAACCGCGACGAGTGCGTCACGGTCACCGTCGCCGGGATGGGCCTGCACGT--CCGCT 18907 |||||||| ||||| |||| || || | ||| || | || ||| || |||| Sbjct 781 TGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCA 840 Query 18908 CCG----GCTACGCCGCCGCGGTG------CTCGGCGCGTGGGTTCGCTGGTACCACGAG 18957 ||| || | | |||| || || |||||||| ||| | |||||| || Sbjct 841 CCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGC 900 Query 18958 AACGTCGAGCGCATCGACCAGTACAAGCCGCTCGACGACTGGGGGTGGTCGAACACCAAC 19017 |||||||| ||| ||| || | || ||||||||||| ||| ||| Sbjct 901 AACGTCGAAGAGATC-ACCT-------CCCC----CGTGTGGGGGTGGTCTGCCACTAAC 948 Query 19018 GACGT-CGCGACGTCGAATCACCTGTCGGGCACCGCCGTCGACCTCAACGCCACCCAGTA 19076 || || ||| | ||||||||| | |||||||| || ||| | | || || |||| Sbjct 949 GATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAAGTA 1008 Query 19077 CCCGTGGGGCCGCCGCGTAATGCCGGCCGAG-CGCATCGCGAAGGTGCGCCGGGGTCTCG 19135 ||| ||| || | ||| |||| |||| || ||||| ||| ||| || | Sbjct 1009 CCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAG-GCCAAGGTCCGCAAGGGCCTGG 1067 Query 19136 CCCTGTTCGAGGGCACCATCTTCTGGGGCGCCGACTGGTCACGGGCCGACGAGATGCACT 19195 | |||||||||||| | | ||||||||| ||||||||| || ||||||||||||||| Sbjct 1068 CGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGCACT 1127 Query 19196 ACCA 19199 |||| Sbjct 1128 ACCA 1131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171669280048500