Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031233.1 Length=50346 Score E Sequences producing significant alignments: (Bits) Value seq39852 140 1e-28 seq46163 131 5e-26 >seq39852 Length=3441 Score = 140 bits (154), Expect = 1e-28 Identities = 146/192 (76%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 35617 GACCACCACCTGTCGCGGTACGCCTGCTATCTCATCGCCCTCAACGGCGATCCTCGGAAG 35676 ||| ||||||| || |||||||||||||||||| |||| ||||| |||||||| || ||| Sbjct 1327 GACTACCACCTCTCCCGGTACGCCTGCTATCTCGTCGCACTCAATGGCGATCCACGCAAG 1386 Query 35677 CCAGAGATCGCCGCCGCACAAACGTATTTCGTCATCCGGACGCGTGAGGCCGAG------ 35730 || || ||||| ||||| || || || ||||||||| ||| |||||||||||| Sbjct 1387 CCTGAAATCGCAGCCGCGCAGACATACTTCGTCATCAAGACCCGTGAGGCCGAGACCGCC 1446 Query 35731 GTGTCGGCACCGGCACTGACCGGACCGGAGCTGCTCGCCGCTGCGGTCCTCGAATCCCAG 35790 | | || || || || || || | || || |||||||| || || |||||| | ||| Sbjct 1447 ACGGCCGCGCCCGCGCTCACAGGCACCGACCTACTCGCCGCCGCAGTGCTCGAAGCTCAG 1506 Query 35791 CGCGTCATCGAG 35802 || | |||||| Sbjct 1507 CGGATGATCGAG 1518 >seq46163 Length=1271 Score = 131 bits (144), Expect = 5e-26 Identities = 285/419 (68%), Gaps = 27/419 (6%) Strand=Plus/Plus Query 19391 ATGACTTTCAGAACAGCCTACGGCTACAAGTACTCCGAAAACGGTTGGCGAATGTGCAAC 19450 |||| |||| | || || |||||| | | | ||||| ||||||||||| ||||||||| Sbjct 727 ATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAACGGTTGGCGTATGTGCAAC 786 Query 19451 CGCGACGAGTGCGTCACGGTCACCGTCGCCGGGATGGGCCTGCACGT--CCGCTCCG--- 19505 || ||||| |||| || || | ||| || | || ||| || |||| ||| Sbjct 787 CGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTCGTCGATACCGCACCGCTG 846 Query 19506 -GCTACGCCGCCGAGGTG------CTCGGCGCGTGGGTGCGCTGGTACCACGAGAATGTC 19558 || | | |||| | || |||||||| ||| || |||||| || || ||| Sbjct 847 CGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCTGTACTGGTATGACCGCAACGTC 906 Query 19559 GAGCGCATCGACCTGTACAAGCCGCTCGATGACTGGGGGTGGTCGAACACTAACGACGT- 19617 || ||| |||| | | || || ||||||||||| ||||||||| || Sbjct 907 GAAGAGATC-ACCT--------CCCCCG-TG--TGGGGGTGGTCTGCCACTAACGATGTT 954 Query 19618 CGCGACGTCGAATCACCTGTCGGGCACTGCCGTCGACCTCAACGCCACCCAGTACCCGTG 19677 ||| | ||||||||| | ||||| || || ||| | | || || ||||||| || Sbjct 955 CGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACGTGATGGCACCCAAGTACCCCTG 1014 Query 19678 GGCGCGGCGCGTGATGCCGGCCGAT-CGCATCGCGAAGGTGCGTCGAGGCCTGGCCTTGT 19736 | |||| | |||| |||| |||| || ||||| || |||||||| ||| Sbjct 1015 GCAGCGGTACACGATGGATGCCGCCACGCAG-GCCAAGGTCCGCAAGGGCCTGGCGCTGT 1073 Query 19737 TCGAGGGCAACATCTTCTGGGGCGCCGACTGGTCACGCGCGGACGAGATGCACTACCAG 19795 |||||||| | ||||||||| ||||||||| ||| | |||||||||||||||||| Sbjct 1074 TCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGCCCCGACGAGATGCACTACCAG 1132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160888581022000