Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031247.1 Length=50636 Score E Sequences producing significant alignments: (Bits) Value seq40065 125 2e-24 seq46163 120 1e-22 >seq40065 Length=1045 Score = 125 bits (138), Expect = 2e-24 Identities = 363/549 (66%), Gaps = 16/549 (3%) Strand=Plus/Plus Query 36131 CGACGGCCACTCGTCGACGGACGGTCGACGGTCTGGGCGAACCGAAACGCCGGCACCGTC 36190 || |||||||| || | || | ||||| ||||||| |||||| || ||| ||| Sbjct 10 CGCCGGCCACTACTCCAAGGCCTCTCGACCGTCTGGGGGAACCGGGACAAGGGCCAGGTC 69 Query 36191 ACCGCCGTGTACGACGACCTCGGTCCCGCCGGCGAC--CTG--TTCACCGACCGTGCCGA 36246 | || | ||| |||| ||||| | | || |||| | | | |||| || || Sbjct 70 AGCGTGATCTACAACGAACTCGGGACGGACG-CGACGGCGGACTACACCCGTCGAAATGA 128 Query 36247 CCGGCTCGAGCTGCGGTTCGTCCGCGACGCCGACTGG---AAGCTGTTCCTCGCGACCGC 36303 | ||||| ||| || ||| | || |||| ||| | |||||| || ||| Sbjct 129 CGTGCTCGCCTTGCAATTTGTCGCCCACCCCGATTGGGCCACCCTGTTCAATGC---CGC 185 Query 36304 TGACGGTCAGCACCACTCGCAGGAAGAGTTCGGCAACCTGCTCGAGTCGGCCGGGCACCT 36363 |||||| || |||||| ||| || |||||| ||||| ||||| |||||||||||| Sbjct 186 TGACGGCAAGTTCCACTCTCAGCTGGATTTCGGCGACCTGATCGAGCAGGCCGGGCACCT 245 Query 36364 GATCACCAGCCACGCCGCGGCCGACCTGCTCGAGCTCGTCGACAGCATTCGTGCGACGTC 36423 ||||||| ||| || ||||| | | ||| || |||||||||| || || || Sbjct 246 GATCACCTCGCACCAGGCCGCCGATGTCATGGAGATCATCGACAGCATCCGAGCATCGAG 305 Query 36424 GTCCGGTTCGTTCGAGTCGCGCATCCAGCGGTCGACCGGCGGGCAGACGCTCTCGTTCTC 36483 || || |||||||| | ||| |||| | ||| || | || || | | | Sbjct 306 CAAGGGATCATTCGAGTCAGGAATCAAGCGCGCCACCAGCAGCGTGAACCTGACCTACAG 365 Query 36484 CGAAGAGGTCGAGGCGCGCGCTGG--CCGGAAC-GGTCAGCTCGAGGTACCGCGCACGGT 36540 ||| || || ||| || || ||| ||| | || || ||| |||||||| | Sbjct 366 CGAGGAAGTATCGGCCAAGGCGGGCACCGCAACTCGGCAACTTGAGATACCGCGCGAAAT 425 Query 36541 GACGTTCCTGGTCTCGCCGTTCGAGGATTACCCGCCGGTCGAGGTCACGTGCTGGCTGCG 36600 || || || | || |||||||| |||||| ||||||| ||||||| |||| Sbjct 426 CACCTTGTCGGCCCGACCATTCGAGGACTACCCGGTCATCGAGGTTCGGTGCTGGTTGCG 485 Query 36601 GCTGCGCATCTC-CGGCGGCAAGCTCTCGCTCGGCCTGTTCCCGCAACCGTACGACCACG 36659 ||| |||||| | | ||||| || ||||||||||||||| || || || | ||| Sbjct 486 CCTGAACATCTCGCAGGGGCAA-CTGGGGCTCGGCCTGTTCCCACAGCCCTATCAGCACC 544 Query 36660 TGGTGCGCG 36668 | ||||||| Sbjct 545 TCGTGCGCG 553 >seq46163 Length=1271 Score = 120 bits (132), Expect = 1e-22 Identities = 164/229 (72%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 24685 CGCACCGCAACGCGTGCGCCGCGGCGATCGCGGCGCTCGGCAACCGGGTCGGGCTCTACA 24744 ||||||| ||| ||| ||| || ||| | || ||||||||||| ||||||| | | Sbjct 246 CGCACCGACGCGCCTGCTGCGCCGCAATCACCGCACTCGGCAACCGAATCGGGCTATTC- 304 Query 24745 CGTCGGCCGG---CGCCCGCGTCGGCACCGTCTACGCCGACACCACCTGGGGTGCCGCCG 24801 ||||| | |||| || ||||||| |||||||||||||||||||| || | | Sbjct 305 -----GCCGGTTCCACCCGGGTAGGCACCGCCTACGCCGACACCACCTGGGCCACCCCAG 359 Query 24802 CGAAGGTCACCGAGGACGGTTTCGACTGGGGGAAGGTGAACGGCTCGCAGGTCACGATCA 24861 | |||||||| ||| ||||| || | |||||||| ||| || ||| Sbjct 360 TCGATGTCACCGAATCCGGCATCGACAAGGCATCATCCACCGGCTCGCTGGTAACCATCT 419 Query 24862 CGGTTCCTGCCGGCACCGTCGCCGACGGCACGCAGATCACCCGATACGG 24910 |||| |||| ||||||||| ||| |||||||| ||||| ||| ||||| Sbjct 420 CGGTACCTGGCGGCACCGTGGCCAACGGCACGGTGATCAACCGGTACGG 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161816021757000