Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031249.1 Length=50127 Score E Sequences producing significant alignments: (Bits) Value seq46163 116 1e-21 >seq46163 Length=1271 Score = 116 bits (128), Expect = 1e-21 Identities = 296/441 (67%), Gaps = 36/441 (8%) Strand=Plus/Plus Query 18423 GAAAGGAGCAACACTGCAATGAGTTTCAGAACAGCGTACGGCTACAAGTACTCCGAGAAC 18482 ||||||| |||| | ||||||||| | || || |||||| | | | ||||||||| Sbjct 710 GAAAGGAAGTACACC-CGATGAGTTTCCGCACCGCATACGGCAATACGGTGTCCGAGAAC 768 Query 18483 GGTTGGCGGATGTGCAACCGCGACGAGTGCGTCACGATCACCGTCGCCGGCATGGGCCTC 18542 |||||||| ||||||||||| ||||| |||| || | | ||| || || |||| Sbjct 769 GGTTGGCGTATGTGCAACCGGGACGAATGCGACATCGTACGCATCGACGAGCTGTACCTC 828 Query 18543 CACGTCAGAT-CCG----GTTACGCA----------GCAGAGG-TGCTCGGCGCGTGGGT 18586 ||| ||| ||| | | |||| || || | |||||||| ||| | Sbjct 829 ---GTC-GATACCGCACCGCTGCGCAAGGGCGCCCCGCTGACCATCCTCGGCGCCTGGCT 884 Query 18587 CCGCTGGTACCACGAGAACGTCGAGCCCATCGACCTGTACAAGCCCCTCGACGACTGGGG 18646 |||||| || |||||||| ||| |||| |||| || ||||| Sbjct 885 GTACTGGTATGACCGCAACGTCGAAGAGATC-ACCT-------CCCC----CGTGTGGGG 932 Query 18647 ATGGTCGAACACCAACGACGT-CGCCACGTCGAACCACCTCTCCGGCACCGGGGTCGACC 18705 ||||| ||| ||||| || ||||| || ||||| | ||||||| || ||| Sbjct 933 GTGGTCTGCCACTAACGATGTTCGCCAACAGTAATCACCTGGCAGGCACCGCTGTTGACG 992 Query 18706 TCAACGCCACCCAGTACCCGTGGGGGCGGCGCGTCATGCCGGCCGAC-CGCATCGCGAAG 18764 | | || || ||||||| ||| |||| | ||| |||| | |||| || ||| Sbjct 993 TGATGGCACCCAAGTACCCCTGGCAGCGGTACACGATGGATGCCGCCACGCAG-GCCAAG 1051 Query 18765 GTCCGGCGCGGTCTCGCACTGTTCGAGGGCAACATCTTCTGGGGCGCAGACTGGTCGCGC 18824 ||||| || || || |||||||||||| | ||||||||| |||||||||||| Sbjct 1052 GTCCGCAAGGGCCTGGCGCTGTTCGAGGGCTCGGTGTTCTGGGGCCGCGACTGGTCGCGC 1111 Query 18825 GCCGACGAGATGCACTACCAG 18845 |||||||||||||||||||| Sbjct 1112 CCCGACGAGATGCACTACCAG 1132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160188203363500