Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031251.1 Length=47880 Score E Sequences producing significant alignments: (Bits) Value seq39852 140 1e-28 seq42164 118 3e-22 >seq39852 Length=3441 Score = 140 bits (154), Expect = 1e-28 Identities = 146/192 (76%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 32740 GACCACCACCTGTCGCGGTACGCCTGCTATCTCATCGCCCTCAACGGCGATCCTCGGAAG 32799 ||| ||||||| || |||||||||||||||||| |||| ||||| |||||||| || ||| Sbjct 1327 GACTACCACCTCTCCCGGTACGCCTGCTATCTCGTCGCACTCAATGGCGATCCACGCAAG 1386 Query 32800 CCAGAGATCGCCGCCGCACAAACGTATTTCGTCATCCGGACGCGTGAGGCCGAG------ 32853 || || ||||| ||||| || || || ||||||||| ||| |||||||||||| Sbjct 1387 CCTGAAATCGCAGCCGCGCAGACATACTTCGTCATCAAGACCCGTGAGGCCGAGACCGCC 1446 Query 32854 GTGTCGGCACCGGCACTGACCGGACCGGAGCTGCTCGCCGCTGCGGTCCTCGAATCCCAG 32913 | | || || || || || || | || || |||||||| || || |||||| | ||| Sbjct 1447 ACGGCCGCGCCCGCGCTCACAGGCACCGACCTACTCGCCGCCGCAGTGCTCGAAGCTCAG 1506 Query 32914 CGCGTCATCGAG 32925 || | |||||| Sbjct 1507 CGGATGATCGAG 1518 >seq42164 Length=289 Score = 118 bits (130), Expect = 3e-22 Identities = 105/131 (80%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 3960 GAGGTCAATGGAGGAAAGGAGGCCATCACCATGGCCACCCTGAATGAGGGCCTCGCGGAG 4019 |||||||| ||||||||||| |||| |||| |||||||||||||||||||| || Sbjct 130 GAGGTCAACAGAGGAAAGGAGCCCATTG---TGGCAACCCTGAATGAGGGCCTCGCCAAG 74 Query 4020 CGCCTCGGCATCCCCGCCGACGCCGACGACGAGACCATCCTGTCCGCGGTCGACGAGGCG 4079 | ||||| ||| ||||||||||||||||||||||| |||| || | || ||| ||| Sbjct 73 CTGCTCGGTATCGATGCCGACGCCGACGACGAGACCATTTTGTCTGCTGCCGCCGAAGCG 14 Query 4080 CTCGCCGAGCG 4090 |||| ||||| Sbjct 13 CTCGAAGAGCG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153002136703000