Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031253.1 Length=77832 Score E Sequences producing significant alignments: (Bits) Value seq46163 131 8e-26 seq43463 100 1e-16 >seq46163 Length=1271 Score = 131 bits (144), Expect = 8e-26 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 27597 CCGCAATATCGCCCTGGGATATGCCCCGATAGTCACCACTTGGGCCGACTGGCAAACGCC 27656 |||||| |||| |||||||| ||||| ||| | ||| || |||| |||| || Sbjct 144 CCGCAACGTCGCGCTGGGATACACCCCGCGCATCAGCGGATGGACCACCTGGGAAACCCC 203 Query 27657 GTAACCGAAAGAAGGGGTTGCA-ATGTCCGTATACCAACCGGCACACCGCCGAGCCGCGT 27715 |||||| | |||| || | ||||||| ||||||| | | ||||| || ||| | Sbjct 204 GTAACCAACAGAAAGGCCCCCGCATGTCCGAATACCAAGCACCGCACCGACGCGCCTGCT 263 Query 27716 GCGCGGCCATCACCGCGCTGGGCAACCGGGTCGGCCTGTACTACGGGACAACCCGTGTCG 27775 |||| || |||||||| || |||||||| |||| || | | ||| | ||||| || | Sbjct 264 GCGCCGCAATCACCGCACTCGGCAACCGAATCGGGCTATTCGCCGGTTCCACCCGGGTAG 323 Query 27776 GCACCGCGTACGCCGACACCACCTGGGCC 27804 ||||||| ||||||||||||||||||||| Sbjct 324 GCACCGCCTACGCCGACACCACCTGGGCC 352 >seq43463 Length=1324 Score = 100 bits (110), Expect = 1e-16 Identities = 194/284 (68%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 15104 TCGATGGACGACACCGTGGCCGTCATGGGGTTGTTCGCCAAGGCGGGCATCCAAGGGTCG 15163 || || || || |||| ||| || | | || ||||||| ||||||| |||||| | Sbjct 827 TCTATTGAAGAGACCGCTACCGCTATCGCGATGCTCGCCAACATGGGCATC-AAGGGTAG 885 Query 15164 -GACGCCGGTACGTCGTTCAAGACGATGCTGACCCACATCGCCAACCCCAGCGATGAGGC 15222 || ||||| ||||| | ||||| ||||| | || | ||| |||||||| | | Sbjct 886 CGATGCCGGCACGTCACTGAAGACCATGCTCATTCAACTGCGCAATCCCAGCGACCAATC 945 Query 15223 CGCGGGCGCGATGGACCGGCTGGGGCTCAACCTCCACACCGCGACCGGTGAGTTCGTCGG 15282 |||| || ||||| ||| || | || || || ||| | |||| | | | | | Sbjct 946 CGCGCAGGCCATGGATGAGCTCGGATTGAAGGTCAACGACGCCAACGGTCAACTGGGCAG 1005 Query 15283 CGTGCGTGAGATGTTCCGGCAGATCGGTGAGGCCGGAAAGGTCATGCGGCCCGACGACTT 15342 | |||||||| ||||||||||| |||| || || ||| ||||| | ||| ||| Sbjct 1006 CATGCGTGAGCTGTTCCGGCAGCTCGGCGAAGCTAAAAACCGCATGCCTACGGACATCTT 1065 Query 15343 CCAGCGCGACGTGGCCAAGGTGTTCGGTACCGACGCCATCCGCG 15386 ||||| || |||| | ||||||| || ||||| ||||||| Sbjct 1066 CCAGCAGAACTTGGCAACCCTGTTCGGCACGGACGCGATCCGCG 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248783628204750