Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_031261.1 Length=48670 Score E Sequences producing significant alignments: (Bits) Value seq46136 174 5e-39 seq45817 111 5e-20 >seq46136 Length=4795 Score = 174 bits (192), Expect = 5e-39 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 11807 TGGCAGCGGCTGTTCGGCACCCAGTTCGAGGATATGGGCGACGCGATCAACCATCTCGAC 11866 ||||| || || |||||||| |||| ||||| |||||||| || ||||| | |||||| Sbjct 800 TGGCAACGCCTTTTCGGCACGCAGTGGGAGGACATGGGCGATGCTGTCAACAAACTCGAC 741 Query 11867 CTCGACCCAGCCAAAAACGAGTTCGTCGACTTGCAGGGCACCTCGGACCGTGCGACCAAG 11926 |||||||| || |||||| ||||| || |||| | ||||||| | || |||| ||| Sbjct 740 CTCGACCCGGCTAAAAACCAGTTCAAGGATCTGCAAGACACCTCGCAGCGATCGACTAAG 681 Query 11927 ACGGCGACGGACAACTTCAAGTCCGACTGGGAGGAAGCGACCCGCACCGTCGGACAGTTC 11986 || |||||||| | ||||||||||| |||||| || ||| || |||| || | Sbjct 680 ACCGCGACGGAGACGTTCAAGTCCGAGTGGGAGAGCGCAACCAAGACGGTCGATCAATGG 621 Query 11987 TTCTCGGACCTGAAAACCGATATCGCCGAGTGGTTCTCGGATCTGCCGGTCATCCGCGAC 12046 ||| | ||||| || ||| |||| | || ||||| ||||||||| |||||| | ||| Sbjct 620 TTCACCGACCTAAAGACCAGTATCTCGGATTGGTTTGTGGATCTGCCTGTCATCAGGGAC 561 Query 12047 ATTCCG-CGATTCATCACCGACGTGTTC 12073 || ||| ||| | |||| ||| ||||| Sbjct 560 ATCCCGACGA-TGATCAAGGACCTGTTC 534 >seq45817 Length=532 Score = 111 bits (122), Expect = 5e-20 Identities = 196/282 (70%), Gaps = 23/282 (8%) Strand=Plus/Minus Query 29858 GTGCGCGTCGTGCTCATCGGCGGCGAGCCGTGGTTCGTGCTCGCCGACCTCTGCAAGGTG 29917 ||||| ||||| | ||||||||||| || |||||||| || || ||||||||||||||| Sbjct 279 GTGCGGGTCGTCGTTATCGGCGGCGAACCCTGGTTCGTCCTGGCTGACCTCTGCAAGGTG 220 Query 29918 CTCGACATCCG--CAA-------CGTCAAGGACGTTCGGGATCGCTTAGCGGATGGGG-- 29966 || | ||| | | ||||| ||| ||| | | ||| | | | || Sbjct 219 CTGGGCATTTTGTCGAGTAGTGCCGTCACGGATGTTAAGAAGCGCCTTGACCAGGGCACT 160 Query 29967 -TAGATCAGACCTACCCCATCGCTGACAGCCTCGGTCGCACGCA-GCAGGCGACC---AT 30021 | ||| |||| | || || ||||| || | || || | |||| || Sbjct 159 CTGGATTCGACCAAGGTTAT----GAA---CTCGGCCGGATACATGCGTGAGACCGACAT 107 Query 30022 CGTGTCCGAGTCGGGCATGTACGAGGTCGTCATCCGCTCGGACAAACCCGAGGCTGTCGC 30081 ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 106 CGTGTCCGAAGCGGGCATGTACGAGGTCGTCATACGCTCGGACAAGCCCGAGGCTGTCGA 47 Query 30082 GTTCCGCCGCTGGATCACCGGCACCGTTCTCCCCGAGATCCG 30123 |||||| || | | || || || ||||| ||| ||||| Sbjct 46 GTTCCGGCGTTTCGTTACGGGTACGGTTCTGCCCTCCATCCG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155528613188000