Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq48954 176 5e-39 seq48864 168 7e-37 seq75 116 4e-21 seq199 102 8e-17 seq44004 84.2 2e-11 seq42317 82.4 8e-11 >seq48954 Length=696 Score = 176 bits (194), Expect = 5e-39 Identities = 158/196 (81%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| |||||||||| |||||||||| ||||| | |||||||| |||||| Sbjct 501 TCTCACTCTGTCGCCCAGGCTGTAGTGCAGTGGTGCGATCTTGGGTCACTGCAGCCTCCG 560 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAG--GC 8461 ||| || ||||||||| ||||| | || |||||||| ||||||||||| |||||| || Sbjct 561 CCTGCCAGGTTCAAGCAATTCTTCCACCCCAGCCTCCCGAGTAGCTGGGGTTACAGGTGC 620 Query 8462 AAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGA-GAGGGTTTCACCATGT 8520 |||| |||| || ||| ||||||| |||||||| | |||||||||||||| Sbjct 621 CTGCCCCACGGCGCCTGACTCCATTTCGTATTTTCAGTAGAGACGGGGGTTTCACCATGT 680 Query 8521 TGGCCAGGCTGGTCTC 8536 ||||| |||||||||| Sbjct 681 TGGCCGGGCTGGTCTC 696 >seq48864 Length=438413 Score = 168 bits (186), Expect = 7e-37 Identities = 495/748 (66%), Gaps = 15/748 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 |||||| ||||| | ||||| || || || | |||| || || || || ||||| || | Sbjct 419726 CATAACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 419784 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGA-AGTATTATATACAGCTTTACAT 23322 | | | | ||||| |||||||| ||||||||||| | | | | | || | || || Sbjct 419785 CCAGTAAAATATTCTCCATAAAGTCAAATGGATTTCCTACTCTGAAA-ACCTCGCTAAAT 419843 Query 23323 GATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382 | |||| | ||| |||| || ||||| ||||| || || |||||| | || Sbjct 419844 CCCAGTTCCAGCATAAGTCTATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAG 419902 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAA-TAGTTTTTCAATGGAAAC 23441 || || | || || || || || | || || | ||| | | || || | || Sbjct 419903 TTCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGAC 419962 Query 23442 AGCATCTTTAATTATTTGAACAATAACT-TCTTCACTAGGTGGATATTTTAA-ATAC--T 23497 ||||| |||| |||| | | ||| ||| | ||| ||||| | || | | | Sbjct 419963 AGCATTGATAATGATTT---CTTTCACTCTCTGCTCTAAC-GGATAGTGTAGCAGGCGTT 420018 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | |||| | | |||| || ||| |||| | ||||| || ||||||| |||||| | Sbjct 420019 TGAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGG 420078 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||||||| | || ||||| | || ||||| || | ||| ||||| ||||| || | Sbjct 420079 AAAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGC 420138 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | | |||||| || || || || || ||||| || ||| |||| ||| | || || | Sbjct 420139 CAGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCT 420198 Query 23678 TATAA-TCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 | || |||||| | ||||| |||| | || ||||| || ||| Sbjct 420199 CCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTT 420258 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || | |||||||| |||||| |||| | || || || ||||| || Sbjct 420259 TCAATGGCACTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGG 420318 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 |||||||||||||||||| | || ||||| || ||||| || || ||||| ||||| | Sbjct 420319 AAACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGG 420378 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | | ||| || | ||||| | | | ||||| || || || ||| Sbjct 420379 GCTTCTGTAATGTCAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCA 420438 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACAT 23944 |||| || |||||||||| ||||||| Sbjct 420439 TCACATGCTACAAAGAAAGCCAGAACAT 420466 Score = 163 bits (180), Expect = 3e-35 Identities = 494/748 (66%), Gaps = 15/748 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 |||||| ||||| | ||||| || || || | |||| || || || || ||||| || | Sbjct 414803 CATAACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 414861 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGA-AGTATTATATACAGCTTTACAT 23322 | | | | ||||| |||||||| ||||||||||| | | | | | || | || || Sbjct 414862 CCAGTAAAATATTCTCCATAAAGTCAAATGGATTTCCTACTCTGAAA-ACCTCGCTAAAT 414920 Query 23323 GATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382 | |||| | ||| |||| || ||||| ||||| || || |||||| | || Sbjct 414921 CCCAGTTCCAGCATAAGTCTATTGGCAACAAACTCAATGTACTGCTTCATCAAG-CGCAG 414979 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAA-TAGTTTTTCAATGGAAAC 23441 || || | || || || || || | || || | ||| | | || || | || Sbjct 414980 TTCATCTCAATGAGCTTCACAGGCAAAGCCTCTGTGAGGAACTCCTGTTCCACTCTTGAC 415039 Query 23442 AGCATCTTTAATTATTTGAACAATAACT-TCTTCACTAGGTGGATATTTTAA-ATAC--T 23497 ||||| |||| |||| | | ||| ||| | ||| ||||| | || | | | Sbjct 415040 AGCATTGATAATGATTT---CTTTCACTCTCTGCTCTAAC-GGATAGTGTAGCAGGCGTT 415095 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | |||| | | |||| || ||| |||| | ||||| || ||||||| |||||| | Sbjct 415096 TGAACATCAGGTAGGCAACATTACAGTGTAAACTCTCATCTCTGCTAATCAGTTCATTGG 415155 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||||||| | || ||||| | || ||||| || | ||| ||||| ||||| || Sbjct 415156 AAAATGTGAGACCAGGCATCAGTCTTCGTTCCTTGAGCCAGAATATCTATGCAAACGAGA 415215 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | | |||||| || || || || || ||||| || ||| |||| ||| | || || | Sbjct 415216 CAGTAAAGAAGATTCCTTCTACTGCTGCAAAAGCTACACAACGTTCTCCATAGGTAGCCT 415275 Query 23678 TATAA-TCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 | || |||||| | ||||| |||| | || ||||| || ||| Sbjct 415276 CCTTTGTCCCCAATCCAACGCAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATGGTT 415335 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || | |||||||| |||||| |||| | || || || ||||| || Sbjct 415336 TCAATGGCACTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGG 415395 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 |||||||||||||||||| | || ||||| || ||||| || || ||||| ||||| | Sbjct 415396 AAACTATACATTTCAGAAGGTATGTTTTCCATGGCAATTTGGAAGCCATACAAACAGCGG 415455 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | | ||| || | ||||| | | | ||||| || || || ||| Sbjct 415456 GCTTCTGTAATGTCAACTTCTTGGCTAAATCGCTCCACCAGGTTTTCATTTACGATGCCA 415515 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACAT 23944 |||| || |||||||||| ||||||| Sbjct 415516 TCACATGCTACAAAGAAAGCCAGAACAT 415543 >seq75 Length=11204613 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || ||||||| ||||||||||||||| | || ||||| | ||||||||| || Sbjct 8448222 TCATCTCTGCTAATCAGTTCATTAGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8448281 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||||| ||||| || || |||||||| || || || || || |||||||| Sbjct 8448282 AGCCAGAATATTGATGCAAACGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGGCT 8448341 Query 23653 ACAAGACGT 23661 |||| |||| Sbjct 8448342 ACAACACGT 8448350 >seq199 Length=4383281 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || || || | |||||| ||||| || | ||| ||||| | |||| || || Sbjct 4204741 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCTTC 4204682 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||||| Sbjct 4204681 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 4204622 Query 23653 ACAA 23656 |||| Sbjct 4204621 ACAA 4204618 >seq44004 Length=9819444 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 12/123 (10%) Strand=Plus/Minus Query 8484 TTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCC 8543 ||||| | ||||| |||||| | ||| ||||||||||| ||||||||| ||||||||| Sbjct 9541400 TTTTTCTTTTTTT--TAGAGACAAGGTCTCACCATGTTGCCCAGGCTGGCCTCGAACTC- 9541344 Query 8544 TGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCC 8603 |||||| |||||||| |||||| | |||||||| ||||||| ||| Sbjct 9541343 ---------ATGATCCTCCTGCCTCAGCCTCCTGAGTAATTGGGATTATAGGCATGTGCC 9541293 Query 8604 ACC 8606 ||| Sbjct 9541292 ACC 9541290 >seq42317 Length=1112617 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 8418 GCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCCACCACGCCA 8477 || || |||||||||||||||| |||||||||||| |||||||| | |||| |||| | Sbjct 433187 GCCATCCTCCTGCCTCAGCCTCTGGAGTAGCTGGGACTACAGGCATATGCCAACACGTCC 433246 Query 8478 AGCTAATTTTTGTATTT 8494 |||| ||||||| |||| Sbjct 433247 AGCT-ATTTTTGCATTT 433262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521157181050000