Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tupaia_20chinensis_20[refseq_20GCF_5F000334495.1_202013-01-31] 50,750 sequences; 2,846,580,235 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq39882 152 7e-32 seq348 91.5 2e-13 >seq39882 Length=1284669 Score = 152 bits (168), Expect = 7e-32 Identities = 224/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 8269 GAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 ||||| |||| |||| | ||| | | || ||||| ||||| ||||| | |||| Sbjct 1023864 GAGCTGTGCATCTTGAACGCTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTGCAGAT 1023805 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 ||||||||||| | || | |||| ||| || || || ||||| ||||||||||| Sbjct 1023804 GAGAGACTGAATGGAGGCTGTGTTGATGATTTTAAAACCTACTTCTCCACCGAAGGTGCT 1023745 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 ||||||||||||| | || || ||||| || |||| || ||||| | |||||| || Sbjct 1023744 GGGCTTCCAGTACTCAGGAGAACAGATAGGATTACCCATCAGTCCTTTCAAGGAGAATGG 1023685 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 || || | || | ||| ||||||| |||||||||| || || ||||||||||||| Sbjct 1023684 CGCTCCAAGTTCTACCATGGTCTCACCAAAGATGGCGTCTGGGCGTGGCTTTTCCACCAG 1023625 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8568 | | | |||||||||| || || | ||| || || || || | || | || Sbjct 1023624 CAGGGCTGGATACAGCTCCATGGCATCAATGTCACCATACAGTGCTTCCAACTCCGTGGC 1023565 Query 8569 GATCTCCTTTTCTCCTG 8585 || ||||| ||||||| Sbjct 1023564 CATTTCCTTCTCTCCTG 1023548 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 || |||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||| Sbjct 1020416 CTCACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCCGTCTTGAAA 1020357 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || ||||| || || |||| || | |||||| | || ||||| || ||||| Sbjct 1020356 AACTGATGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCTTGAGGATCA 1020297 Query 9770 GGAGTGAA 9777 || |||| Sbjct 1020296 GGGATGAA 1020289 >seq348 Length=1967584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || || |||||||| || ||||||||| ||| || || Sbjct 367267 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAGAGCTGCTCGTCATCCCAGGTGGGGTGC 367326 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| ||||| || | | Sbjct 367327 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCGCGCAGCCAGAGTGTGGCATAGAGC 367386 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | || ||||| |||| || || ||||||| Sbjct 367387 ATGAGCCCAGGAAGTAGCCCAAACACCTCCTGGCCCACAGCCA 367429 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || || ||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 370150 CTCACGCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 370207 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||||||||| | Sbjct 370208 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCCTGGGGGT 370267 Query 9768 CGGGAGTGAAGGTCCTCC 9785 |||| |||| |||||| Sbjct 370268 CGGGTATGAACTTCCTCC 370285 Score = 89.7 bits (98), Expect = 7e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || ||| || || | || || || ||||| |||||||||||| |||| || Sbjct 359450 TTGACAATGTTGAAGCCAACCTTGCCACCAAATGTGCTTGGCTTCCAGTACTCCGGAGAA 359509 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| || | | || || || || || || ||||| || | ||||| || ||| Sbjct 359510 CAGATGGGATTTCCTAGAAGACCCTTAAGAGAAAAGGGAGCACCAATCTCGATCATACTC 359569 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||| | ||| || || |||||| | | || || | ||| | ||||| Sbjct 359570 TCCCCAAAGATAGAGTTTGGTTGGCACTTTTCGAGAAGCAACCCTGGGTAGAACTCCAAG 359629 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| |||||| || | || | || || || ||||| || |||||| Sbjct 359630 GCATCGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCTTTCTCTCCT 359683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716422031280000