Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq42693 87.8 1e-12 >seq42693 Length=180072 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| | | ||||| || || | | ||||| || || || | || Sbjct 13194 GATCTTCCCCTGATGGCATTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTGAAT 13135 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || |||| ||||| | |||||||| || || |||||||| || || || || ||| Sbjct 13134 GGGGAGCTATCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTTC 13075 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACT 19132 |||||||| | ||||| || || |||||||| | || ||| | || || || Sbjct 13074 AACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACATATCACGGGCCT 13022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396779191582305