Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq17396 129 4e-25 seq70033 123 2e-23 seq147107 104 2e-17 seq241 87.8 1e-12 >seq17396 Length=144322 Score = 129 bits (142), Expect = 4e-25 Identities = 175/240 (73%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 26937 TAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTC 26996 ||| | |||| | | ||||| | | |||||| |||||||| ||| ||| ||||||||| Sbjct 10428 TAGGCCACATGGCGGACAATAGAGGAAACGCAGGTGCAGCCCACACCCACCAGCATCTTC 10369 Query 26997 TCTAGCCTAAA--TGAATTAGGGCAGGGTTGATG--CCCTTTGCGCACCACTAGAATCTC 27052 || |||| || |||| |||||| | | | |||| | | | || || ||||| Sbjct 10368 TCCAGCCGGAAAGTGAAG--GGGCAGCTCTCAGGTTCCCTCTTC--AGGACCAGGATCTC 10313 Query 27053 TTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCC 27112 ||| ||||| | || || |||||||||| ||| | ||||| ||||| || ||||| | Sbjct 10312 TTGCTGGATGAGAACAGAATTCATGTGGTGGTCCAGCTTCCCCTCAGCGTTGACACAGCG 10253 Query 27113 TAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| ||||||||||||||||| || | || |||||||| Sbjct 10252 CTGGTGGCGGCACTGTGCCTCCCAGATCACAGAGGGATATCTGTCAGGGTCCTCATTGCG 10193 >seq70033 Length=19831 Score = 123 bits (136), Expect = 2e-23 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4168 TACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGT 4227 || |||||||| ||||| | |||||| ||||||||||||||| ||||||| ||||| ||| Sbjct 3072 TAAACAGAACTGCCTCCGACTATCCAAACCATGTCTACTTTACTTGCTAACTCTGGTTGT 3131 Query 4228 TCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || |||||||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 3132 TCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 3187 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 12522 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 12581 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||||| | |||||||||| || Sbjct 12582 AATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 12630 >seq147107 Length=759 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| | | ||||| |||||| ||||| ||||||| |||||| || ||||| Sbjct 611 AAGTTTATATTTCCCCAAATCAATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCAT 670 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| ||| | || | || ||| | | |||| ||||| || | ||| | Sbjct 671 GATCCTTGTCACAAAGAGTCTGAGGTGGCCTGGTTGATTCATGGCTTCCTTTAAAACAAA 730 Query 4176 AC 4177 || Sbjct 731 AC 732 >seq241 Length=438946 Score = 87.8 bits (96), Expect = 1e-12 Identities = 125/176 (71%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 4191 CCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTT-----CGGTAAGTTTTAAAGCA 4245 ||| |||||||||| ||||||||||||||||| | || | ||||||||||| || Sbjct 406673 CCAAACCATGTCTAATTTATTTGCTAATTCTGTTTTTTTCCCCCAGTAAGTTTTAAGACA 406614 Query 4246 TCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTG 4305 | ||| | | || || | ||||||||||| || || | |||| ||||| | | | Sbjct 406613 TTGTCTGGATTTTTGGCAAGAAAATGAGCTCCTTGCGGTGGTTCCTCAAGTTCTCTACAG 406554 Query 4306 AGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCA 4361 ||||| | ||||||| | || ||| | ||||||| ||||| |||| ||| Sbjct 406553 AGAACTATGGTAATTCTTTCCTTCAAAAGTTCATTCTTCTTAGGAACGGAGAGCCA 406498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358787293979879