Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4803 127 2e-24 seq1495 120 4e-22 seq7634 114 2e-20 seq12971 87.8 2e-12 >seq4803 Length=331686 Score = 127 bits (140), Expect = 2e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||||||||| |||||||| || |||||||| || || || | Sbjct 153631 ACCTGAAATTCTCCTGACAATACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 153572 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 153571 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 153512 Query 53270 CTATTTCT 53277 || ||||| Sbjct 153511 CTGTTTCT 153504 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||||| |||| || || || || || | || || ||||||||||| || || || | Sbjct 150270 GATCCCTCATACGTTTCATAGGGGCCATGCTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 150211 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || || |||||||||||||| ||||| | |||||||| || ||||| |||| ||| Sbjct 150210 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 150151 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || ||||| | | || || || || ||||||| || || || ||||| || || || Sbjct 150150 AAGGGATATCTCATCAGGATGAAAGCATCTGCTAGACCCTGTACCCCAATTCCAATGGGC 150091 Query 53561 CTATGTCTCTTATTAGAGAT 53580 | ||| | ||||| || || Sbjct 150090 CGATGGCGTTTATTTGATAT 150071 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 132105 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 132046 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | ||||| ||| | ||||| | ||| ||||||| Sbjct 132045 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCCGCTGTCTCGGCAGCCAGGGTGTCCA 131986 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| |||| | ||||| || || ||||| Sbjct 131985 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGAATTACTTTCAT 131940 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| || | || || || |||||||| | Sbjct 157528 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATGGATGT 157469 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 157468 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 157409 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 157408 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 157358 >seq1495 Length=642193 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 168299 TCATCCCTGCTGATGAGTTCATTTGAAAAGGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 168240 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 168239 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 168180 Query 24279 ATAAGTCTTTCTCC 24292 | | ||||||||| Sbjct 168179 ACCACTCTTTCTCC 168166 >seq7634 Length=216425 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | || ||||||||||| || || ||||| || || || || | Sbjct 206468 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCTGGCATCAGTCCCCGTTTCT 206409 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||| ||||| || ||||| || || ||||||| Sbjct 206408 TGAGCCAGAATATCGATGCAAAAGAACCAGAGAAGAAGATCCCTTCCACCGCAGCAAAGG 206349 Query 24277 CAATAAGTCTTTCTCC 24292 | | || || |||||| Sbjct 206348 CCACAACTCGTTCTCC 206333 >seq12971 Length=450841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | ||||| ||||| ||||| ||||||||||| ||||| Sbjct 9298 ATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATCTCCGAGTGAATGTTTTCCATGGC 9239 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || || || || |||||||| | ||||| |||| || |||||| Sbjct 9238 AATCTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCT 9193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589568302183920