Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq14550 255 7e-63 seq42693 132 6e-26 seq13983 122 1e-22 seq515227 113 5e-20 seq1218 93.3 5e-14 >seq14550 Length=171250 Score = 255 bits (282), Expect = 7e-63 Identities = 596/887 (67%), Gaps = 19/887 (2%) Strand=Plus/Plus Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || ||||| || |||| | ||||||| || | || ||| | || |||||| ||| Sbjct 98877 CTGGTGTTCATCATTGGCCTCCTGGGCAACATGATGGTTGTGCTGATCCTCATAAAGTAC 98936 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | |||| | ||| | ||||| || | ||| | ||||||||||| ||||| |||| Sbjct 98937 AGGAAGCTACAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGATCTGCTC 98996 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666 ||||| || ||| | ||||| ||||| |||||| || ||| |||| ||| |||| Sbjct 98997 TTTCTCTTCACTGTCCCATTCTGGATTCACTATGTTC---TGTGGAATGAGTGGGGTTTT 99053 Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 || | | |||| ||| ||||| || | | |||| || | |||||||| || || Sbjct 99054 GGCCACTACATGTGCAAAATGCTCTCTGGGTTTTATTACCTGGCTTTGTACAGCGAGATC 99113 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC- 9785 |||| |||||||||||| ||| | |||||||| || ||| | ||| ||||||| ||| Sbjct 99114 TTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCTATCGTCCATGCTGTGTTTGCC 99173 Query 9786 -TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGT-GTATGTACCTGGTTTCTG 9843 || ||| |||| ||||| | || || | ||| | | || |||||| ||| Sbjct 99174 CTTCGAGCCC--GAACTGTAACTTTTGCTATTATCACCAGCAGCATC-ACCTGGGGCCTG 99230 Query 9844 GCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGG 9903 ||||| || | | ||||||||| |||| |||| |||||| || ||| | Sbjct 99231 GCAGGACTGGCAGCATTGCCTGAATTTATCTTCCATGAGTCCCAAGACAACTTTGGAGAG 99290 Query 9904 GTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGT 9962 || || |||| ||||||||| | | || | |||| ||| ||| | Sbjct 99291 CTTTCCTGCAGTCCTCGTTACCCAGAGG-GCAGAGAAGACAGCTGGAAGCGTTTCCATGC 99349 Query 9963 TGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTA 10022 | || ||| || || || | | | ||||| ||||||||| ||||||||| Sbjct 99350 TCTAAGAATGAACATCTTTGGTTTAGCTCTTCCTCTCGTCATTATGGTCATCTGCTACTC 99409 Query 10023 TGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCT 10082 | || || | || ||| |||| |||||| || ||||| ||||||||||| |||| Sbjct 99410 AGGGATCATTAAAACTCTGCTGAGATGCCCCAATAAAAAGAAACACAAGGCCATCCGGCT 99469 Query 10083 CATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 10142 || ||||| | ||| | | || |||| |||||||||| || |||||| | |||||||| Sbjct 99470 TATTTTTGTTGTTATGATAGTCTTTTTTATTTTTTGGACCCCGTACAACCTGGTTCTCCT 99529 Query 10143 ACTGTCTACCTTTCAC-GCAACCCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACT 10198 | ||| | |||||| ||| | || || ||| | || ||| ||| | || Sbjct 99530 TTTTTCTGCTTTTCACAGCA--CATTTTTGGAGACCAGTTGTCAGCA--GAGTAAACACC 99585 Query 10199 TGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAG 10258 ||||| |||| ||| | | || | | | || |||| ||||| || ||||| |||| Sbjct 99586 TGGACCTGGCCATGCAGGTGACTGAGGTAATTACCCACACCCACTGCTGTATCAATCCAG 99645 Query 10259 TGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCT 10318 | ||||| || || || || |||| ||| | | |||||| | ||| ||||||| Sbjct 99646 TAATCTATGCCTTTGTTGGTGAGAGGTTCCGGAAACACCTTCGGCTCTTTTTCCACAGAA 99705 Query 10319 ACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGAT 10365 | ||||| |||||||| | || || || || || || |||||||| Sbjct 99706 ATGTGGCAATCTACCTGGGAAAATATATTCCATTTCTTCCTGGTGAT 99752 Score = 255 bits (282), Expect = 7e-63 Identities = 596/887 (67%), Gaps = 19/887 (2%) Strand=Plus/Plus Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || ||||| || |||| | ||||||| || | || ||| | || |||||| ||| Sbjct 98877 CTGGTGTTCATCATTGGCCTCCTGGGCAACATGATGGTTGTGCTGATCCTCATAAAGTAC 98936 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | |||| | ||| | ||||| || | ||| | ||||||||||| ||||| |||| Sbjct 98937 AGGAAGCTACAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGATCTGCTC 98996 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552 ||||| || ||| | ||||| ||||| |||||| || ||| |||| ||| |||| Sbjct 98997 TTTCTCTTCACTGTCCCATTCTGGATTCACTATGTTC---TGTGGAATGAGTGGGGTTTT 99053 Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 || | | |||| ||| ||||| || | | |||| || | |||||||| || || Sbjct 99054 GGCCACTACATGTGCAAAATGCTCTCTGGGTTTTATTACCTGGCTTTGTACAGCGAGATC 99113 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC- 176671 |||| |||||||||||| ||| | |||||||| || ||| | ||| ||||||| ||| Sbjct 99114 TTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCTATCGTCCATGCTGTGTTTGCC 99173 Query 176672 -TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGT-GTATGTACCTGGTTTCTG 176729 || ||| |||| ||||| | || || | ||| | | || |||||| ||| Sbjct 99174 CTTCGAGCCC--GAACTGTAACTTTTGCTATTATCACCAGCAGCATC-ACCTGGGGCCTG 99230 Query 176730 GCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGG 176789 ||||| || | | ||||||||| |||| |||| |||||| || ||| | Sbjct 99231 GCAGGACTGGCAGCATTGCCTGAATTTATCTTCCATGAGTCCCAAGACAACTTTGGAGAG 99290 Query 176790 GTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGT 176848 || || |||| ||||||||| | | || | |||| ||| ||| | Sbjct 99291 CTTTCCTGCAGTCCTCGTTACCCAGAGG-GCAGAGAAGACAGCTGGAAGCGTTTCCATGC 99349 Query 176849 TGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTA 176908 | || ||| || || || | | | ||||| ||||||||| ||||||||| Sbjct 99350 TCTAAGAATGAACATCTTTGGTTTAGCTCTTCCTCTCGTCATTATGGTCATCTGCTACTC 99409 Query 176909 TGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCT 176968 | || || | || ||| |||| |||||| || ||||| ||||||||||| |||| Sbjct 99410 AGGGATCATTAAAACTCTGCTGAGATGCCCCAATAAAAAGAAACACAAGGCCATCCGGCT 99469 Query 176969 CATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 177028 || ||||| | ||| | | || |||| |||||||||| || |||||| | |||||||| Sbjct 99470 TATTTTTGTTGTTATGATAGTCTTTTTTATTTTTTGGACCCCGTACAACCTGGTTCTCCT 99529 Query 177029 ACTGTCTACCTTTCAC-GCAACCCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAACT 177084 | ||| | |||||| ||| | || || ||| | || ||| ||| | || Sbjct 99530 TTTTTCTGCTTTTCACAGCA--CATTTTTGGAGACCAGTTGTCAGCA--GAGTAAACACC 99585 Query 177085 TGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAG 177144 ||||| |||| ||| | | || | | | || |||| ||||| || ||||| |||| Sbjct 99586 TGGACCTGGCCATGCAGGTGACTGAGGTAATTACCCACACCCACTGCTGTATCAATCCAG 99645 Query 177145 TGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCT 177204 | ||||| || || || || |||| ||| | | |||||| | ||| ||||||| Sbjct 99646 TAATCTATGCCTTTGTTGGTGAGAGGTTCCGGAAACACCTTCGGCTCTTTTTCCACAGAA 99705 Query 177205 ACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGAT 177251 | ||||| |||||||| | || || || || || || |||||||| Sbjct 99706 ATGTGGCAATCTACCTGGGAAAATATATTCCATTTCTTCCTGGTGAT 99752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 241/370 (65%), Gaps = 3/370 (1%) Strand=Plus/Minus Query 176362 CCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTG 176421 ||||||| || || ||| || |||| || | |||||| || | ||||| | | Sbjct 58551 CCCTGTACTCCCTGGTTTTTGTCATTGGCGTGATAGGCAATGTCCTGGTGGTTCTGGTAC 58492 Query 176422 TCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATAT 176481 |||||| | ||| || | | |||| | || | ||| | |||| ||| ||||| | | Sbjct 58491 TCATAAAACACAAGAGGCTTCGAAACATGACCAGCATCTACTTGTTCAACCTGGCAGTCT 58432 Query 176482 CTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATG 176541 |||| || | || || || | || || || ||| | ||||||| ||| | | Sbjct 58431 CTGATCTGGTCTTCCTCTTCTCATTACCTTTCTGGGTTGACTATATC---ATGAAAGGAG 58375 Query 176542 ATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGT 176601 | ||| |||||||| | || ||||||| | || || | | |||| || ||| Sbjct 58374 ACTGGGTTTTTGGTAATGCCATGTGTAAGTTTCTATCTGGATTTTATTACCTGGGCTTGT 58315 Query 176602 ACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATG 176661 | || | | |||| ||||| |||||| ||| | || || || |||||||||||| | | Sbjct 58314 ATAGTGACATGTTTTTCATCACCCTGCTTACAATTGATAGATACCTAGCTGTTGTCCACG 58255 Query 176662 CTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCT 176721 | || ||| ||||| | || || || | |||||| | | | || | ||||| Sbjct 58254 CAGTGTTTGCCCTGAGGGCCCGGACTGTCACTTTTGGCATCATCAGCAGTATCATTACCT 58195 Query 176722 GGTTTCTGGC 176731 || | ||||| Sbjct 58194 GGGTCCTGGC 58185 Score = 84.2 bits (92), Expect = 3e-11 Identities = 241/370 (65%), Gaps = 3/370 (1%) Strand=Plus/Minus Query 9476 CCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTG 9535 ||||||| || || ||| || |||| || | |||||| || | ||||| | | Sbjct 58551 CCCTGTACTCCCTGGTTTTTGTCATTGGCGTGATAGGCAATGTCCTGGTGGTTCTGGTAC 58492 Query 9536 TCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATAT 9595 |||||| | ||| || | | |||| | || | ||| | |||| ||| ||||| | | Sbjct 58491 TCATAAAACACAAGAGGCTTCGAAACATGACCAGCATCTACTTGTTCAACCTGGCAGTCT 58432 Query 9596 CTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATG 9655 |||| || | || || || | || || || ||| | ||||||| ||| | | Sbjct 58431 CTGATCTGGTCTTCCTCTTCTCATTACCTTTCTGGGTTGACTATATC---ATGAAAGGAG 58375 Query 9656 ATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGT 9715 | ||| |||||||| | || ||||||| | || || | | |||| || ||| Sbjct 58374 ACTGGGTTTTTGGTAATGCCATGTGTAAGTTTCTATCTGGATTTTATTACCTGGGCTTGT 58315 Query 9716 ACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATG 9775 | || | | |||| ||||| |||||| ||| | || || || |||||||||||| | | Sbjct 58314 ATAGTGACATGTTTTTCATCACCCTGCTTACAATTGATAGATACCTAGCTGTTGTCCACG 58255 Query 9776 CTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCT 9835 | || ||| ||||| | || || || | |||||| | | | || | ||||| Sbjct 58254 CAGTGTTTGCCCTGAGGGCCCGGACTGTCACTTTTGGCATCATCAGCAGTATCATTACCT 58195 Query 9836 GGTTTCTGGC 9845 || | ||||| Sbjct 58194 GGGTCCTGGC 58185 >seq42693 Length=180072 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| || || | ||||||||| ||||| | |||||||| |||||||||||| Sbjct 13022 AGGCCCGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGGC 13081 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||| || || || | |||||| |||||||| || |||||||| | || Sbjct 13082 ACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCACC 13141 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||| || || ||| ||||| || |||| ||||| Sbjct 13142 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAATGCCAT 13182 >seq13983 Length=94873 Score = 122 bits (134), Expect = 1e-22 Identities = 124/159 (78%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | |||| || ||||||||| || ||||| || |||||||| |||| | ||| Sbjct 49957 CAGCGGCGCAGCTGCATCCTGAGGGTCTTCAGCTTCTCTCCCAGGGAATTCAAATGCTCC 50016 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || || |||| || |||| ||||| ||||||||||| || | | |||||||||||| Sbjct 50017 TTGATTTCTGG---GTCCTGT--TTCTCTGCCTGGGGCATTACTTTCCCCAGGTAAAACT 50071 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||| || || | ||| ||||| |||| |||||||| Sbjct 50072 GGATCATTTCCGATAAGGCTTGGCAACCCAAGTAACCCT 50110 >seq515227 Length=625 Score = 113 bits (124), Expect = 5e-20 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||||||||||| || |||| ||||| || |||||| |||| ||||||||||||||||| Sbjct 96 TCAGTTTTTCATTTTGATGGTTATGTATGCTTCTATGCAGTTGATGAAGATGTCAAACTC 37 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||||||||||| ||||| || ||||||| Sbjct 36 ATTCATGGCCTTGTAGACACCTTTATCTTGGAGCT 2 >seq1218 Length=84922 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002 ||||||| | ||| ||| | ||||||||||||| ||||||| | | ||| ||| | || Sbjct 28758 AAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTCTCTTC 28699 Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043 ||||| |||||||||||||| ||||| ||| | ||||| || Sbjct 28698 TGGACTCCCTACAACATTGTCCTCCTCCTGACCACCTTCCA 28658 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116 ||||||| | ||| ||| | ||||||||||||| ||||||| | | ||| ||| | || Sbjct 28758 AAGAAGAGGCACAGGGCTGTGAGGCTCATCTTTGCCATCATGATTGTCTACTTTCTCTTC 28699 Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157 ||||| |||||||||||||| ||||| ||| | ||||| || Sbjct 28698 TGGACTCCCTACAACATTGTCCTCCTCCTGACCACCTTCCA 28658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585948998881160