Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq8085 212 8e-50 seq52108 105 8e-18 >seq8085 Length=390415 Score = 212 bits (234), Expect = 8e-50 Identities = 254/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 83049 GCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGT 83108 || ||| ||||||| || ||||| || || | | | | ||| | ||||| |||||| Sbjct 63281 GCTGGGCCAGCAGGGTTTCTATGTCAGGTTCGATGTCGATGGTGCGAAAGCGGCGGCTGT 63222 Query 83109 ACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGT 83168 |||||||||| || ||||| | ||||||| ||||||||| ||||||||||| | || Sbjct 63221 ACCTGCGCACCGGAACACCGTCTGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAATGT 63162 Query 83169 CGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGT 83228 ||||||||||||| ||||||||| ||| || ||||||| ||| ||||| | Sbjct 63161 CGTTGCGGCACACGGGAGACCAGATGATGTACTTGGGGTCGGTCATGAGCGCAGCGGGAT 63102 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 |||| || || || |||| ||| | || |||||||| |||||||| || ||| || ||| Sbjct 63101 CGTCACTGGGTGCTGGCAAGGCATTCCGCAGGAAGGCAAAGAGCGGGTGAGCCTTTTCAC 63042 Query 83289 CGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGA 83348 | || || ||||||||||| || || | ||||| ||||| || || || || |||| Sbjct 63041 CATTCACTTCGCACTTCTCAAACAGTGTGAAGTTGGGCTCAAACCCACCACCGGGCCGGA 62982 Query 83349 CGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 | | ||| |||||| || ||||| |||||| | | || |||| Sbjct 62981 CATACTTGAGGGAATTCAGAATCTCTTCATTCTTGCCATTCTCCT 62937 Score = 181 bits (200), Expect = 1e-40 Identities = 178/229 (78%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || ||||| ||||| || |||| || || | Sbjct 62736 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCACCAGGCCACGAGGCCCCAGAC 62677 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||| |||||||||| ||||| |||||| |||| | |||||||||||||| | Sbjct 62676 GCTTCTGCAGATCGTTCATCTCGGTGTAGTCCCGGGTCGTGGTGCCTCAGAGGGACGCAA 62617 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | |||| | |||||| || || || || | Sbjct 62616 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCCG 62557 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGC 83619 | ||||||||| |||||||| ||||| | ||| || |||||| || Sbjct 62556 CCAGCGGGCGTGCGGAGAAGGCATACACGG---TGGCCTGTGCCGCCGC 62511 >seq52108 Length=190639 Score = 105 bits (116), Expect = 8e-18 Identities = 185/264 (70%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || ||||||||| || ||| Sbjct 148507 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCCCGCCTGC 148565 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 148566 TGGTGCACCTCTTCCCGGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTACAACTGCA 148625 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | || |||| ||||| Sbjct 148626 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCTGCCCGCATCAGGCTGATCCGCCACTAC 148684 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| | || ||||| || ||||| |||||||||| | |||| ||| Sbjct 148685 GTGCAGCTCCTCTACCCGAGAGCCAAGAACGACCGCGTGTGGACCTTGGAGTTTGTGGGT 148744 Query 50648 TGCCTGGACGAGCGCTGCCGGCGC 50671 |||||||||||||| || ||| Sbjct 148745 AAACTGGACGAGCGCTGTCGCCGC 148768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604538045695160