Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4069 87.8 2e-12 >seq4069 Length=665586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | | ||||| | ||| |||||||| || || ||||| |||| | | Sbjct 312661 CCACCTCGCAGACGCAACACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTAGGAC 312602 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | |||||||| |||||||| ||| | || || ||||||||||| || Sbjct 312601 AGGGTGCAGCCATCCTCCAGGTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 312542 Query 21069 ACGCCTTCCTTGT 21081 | | ||||||||| Sbjct 312541 ATGACTTCCTTGT 312529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419379190231364