Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12971 91.5 2e-13 seq36578 87.8 2e-12 >seq12971 Length=450841 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| |||| | || ||||||||||| ||||| | |||||||| |||||| || Sbjct 7313 GAGCCGTTGCTCAGAGACAACCCCCGCCGCTTCGTTGTCTTCCCCATCGAATACCATGAT 7372 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| || || ||||| || || ||||| | ||||||||| Sbjct 7373 ATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCCGAGGAGGT 7425 >seq36578 Length=50456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || ||||||||||||||| | ||||| || |||||||| |||||||| Sbjct 1331 GGTGGAGCGCTTTAGTCAGGAGGTGCAGGTCCCAGAGGCTCGCTGCTTCTATGGCTTTCA 1390 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||| ||| ||||| || ||||| || ||||| Sbjct 1391 GATCCTCATCGAGAATGTTCACTCAGAGATGTA 1423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511615054929040