Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq42693 86.0 4e-12 >seq42693 Length=180072 Score = 86.0 bits (94), Expect = 4e-12 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 97396 CCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 ||||| || |||||||||||||||||||| ||||| |||||||| || || ||||| ||| Sbjct 18894 CCTTG-TAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCT 18952 Query 97456 TCTTCTCTATCACAGAA-ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCA 97514 || | || || |||| |||||| | || ||| | | || ||||| |||||||| Sbjct 18953 TCCTGTCGGGCAGAGAATCCCAAGC-TGTCCAAAAAATCTCGGGACCCATTGGCATCCCA 19011 Query 97515 AAT 97517 ||| Sbjct 19012 AAT 19014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 344418767205530