Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1495 96.9 3e-15 seq7634 95.1 1e-14 >seq1495 Length=642193 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 15908 AACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTT 15967 || ||||||||| | | | | ||| |||| | | ||||| ||| ||||| || Sbjct 175911 AAGACATTATCTGTGGTTTCCGCCATGACTGCAAATCGCTGATACTCAGAAACTCGTTTC 175852 Query 15968 TCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTT 16027 ||||||||||||||||| |||||||| ||||| || |||||||||||||| ||||||| | Sbjct 175851 TCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTCTCCATAAAATCAAAGGGATTTTCT 175792 Query 16028 G 16028 | Sbjct 175791 G 175791 Score = 89.7 bits (98), Expect = 5e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 |||||| || || ||||| || |||||||||||||| ||| ||||||||||||| || | Sbjct 174413 TAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAG 174354 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAA 16149 | |||||| | |||||||||||||| Sbjct 174353 GTCAACAGGCAAGGCTTCTGTTAAAAA 174327 >seq7634 Length=216425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 15931 CATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTC 15990 ||| ||| ||| | |||||||| | |||| ||| |||||||| ||||| |||||||| Sbjct 209354 CATGACTCCCATCCTCTGATATTCTCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTC 209295 Query 15991 TAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 || ||||||||||||||| || ||||| ||||||| Sbjct 209294 TAGTGAAATATTTTCCATGAAGTCAAATGGATTTT 209260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459276560899400