Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq42442 1090 0.0 seq1723 138 8e-28 >seq42442 Length=231263 Score = 1090 bits (1208), Expect = 0.0 Identities = 1092/1408 (78%), Gaps = 17/1408 (1%) Strand=Plus/Minus Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412 ||||| ||||| ||||||||||||| |||||||||| || || | |||| ||| |||| Sbjct 140407 ATCATATGTGGACCCTGGGCTGCTACCTGCTGCTGGCTGTCATTGCCCTGAAACTGTCCC 140348 Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472 |||| || || |||||| | ||| | |||| ||||| || | ||| || || || | | Sbjct 140347 TCAGATTGAAGTGTGATTTCGATGTCATGGACCTGGAATCAAAGGAATTTCAAAGCCGGT 140288 Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532 |||| ||||| | ||||||| | ||||||||||||||||||||| ||||||||||||| Sbjct 140287 ACTGCAGGGATTTCCTGTACAAGACCCTGAAGCTGCCAGCAAAGAGTTCCATCAACTGTT 140228 Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592 | ||| ||| |||||||| ||| |||||||| |||||| || | | ||||||||| Sbjct 140227 CAGGGGTCATTCGAGGGGAGCAGAAAGCAGTGACCCAGGCTCTGTTGAATAACCTGGAAA 140168 Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652 | ||||| |||||| || |||| | | | ||||| | || || |||||||| Sbjct 140167 TTAAGAAGAAGCGGCAGCTCTTCACAGAGGCAGACTACCTTAGTATGACAGCAGACTGTG 140108 Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712 ||| ||||||| || | |||||||| |||||| |||||||||| | ||||||| ||| Sbjct 140107 AGCACTTCAAGACCAAGAGGAAGTTTATACAGGTCCCACTGAGCATAGAAGAGGCCAACT 140048 Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772 |||||||||| ||||| |||||||| |||||||||||||| || |||||| || |||||| Sbjct 140047 TCCCCATTGCATACTCCATGGTGGTTCATGAGAAGATTGAGAATTTTGAAAGGTTGCTGC 139988 Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832 |||| ||||| ||||||||||||||||||||||||| |||||| |||||| |||| | Sbjct 139987 GAGCTGTGTACACCCCTCAGAACATATACTGTGTCCATGTGGATCAGAAGTCTTCAGAAA 139928 Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892 | || || |||| |||| ||||||| | || |||||||| ||||||||||| || |||| Sbjct 139927 CGTTTAAGCAGGCAGTCAGGGCCATTGTGTCATGCTTCCCAAATGTCTTCATAGCTAGTA 139868 Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952 | ||||| | ||||| ||||| ||||||||||| || || |||||||| ||||| |||| Sbjct 139867 AATTGGTGTCAGTGGTCTATGCTTCCTGGTCCAGGGTACAGGCTGACCTAAACTGCATGG 139808 Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012 ||||||||||||||||| | ||||||||||| ||| | ||||| || || |||||||||| Sbjct 139807 AAGACTTGCTCCAGAGCCCTGTGCCATGGAAATACCTCCTGAACACTTGTGGGACAGACT 139748 Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | ||||| || |||||||| ||||||||| ||| |||||| | ||||| || |||||| Sbjct 139747 TTCCCATCAAAACCAATGCTGAGATGGTCAAGGCTCTCAAGCTATTGAAAGGGCAGAACA 139688 Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGC--TGGAAATACCGCTATGA 108130 |||||||||| |||||||| || || |||| ||| | |||||||| | |||||| Sbjct 139687 GTATGGAGTCAGAGGTACCACCTCCA--CATAAAACATCCCGTTGGAAATATCACTATGA 139630 Query 108131 GGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACC 108190 |||| |||||||| |||||| |||| ||||| |||| || || ||| |||| || | Sbjct 139629 GGTGGCAGACACATTGTACCTAACCAACAAGAGGAAGACTCCGCCTCCTAATAACATAAC 139570 Query 108191 CATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGA 108250 ||||||||| |||||||| || | ||||| ||||||| ||| | |||| || ||| Sbjct 139569 CATGTTCACTGGGAATGCATACATGGTGGCTTCTCGAGACTTCATTGAACACGTGTTAAG 139510 Query 108251 CAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACA 108310 ||| | ||| ||| | |||| | |||||||| |||||||| ||||| || || ||||| Sbjct 139509 TAACTCAAAAGCCCGACAACTGATCGAATGGGTGAAAGACACTTATAGTCCTGATGAACA 139450 Query 108311 CCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAA 108370 ||| ||||| |||||||||||| | || ||||||||||| || | ||| |||| ||| Sbjct 139449 CCTTTGGGCTACCCTTCAGCGTACCCCCTGGATGCCTGGATCAGATCCCTTGCACCGCAA 139390 Query 108371 GTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGG 108430 | | || | |||||||||| | || || || || |||||||||| |||| ||||| Sbjct 139389 ATTTGACCTATCAGACATGAGATCTATTGCAAGACTAACCAAGTGGCAGGACCATGAGGG 139330 Query 108431 AGATGTC-AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCT 108489 ||| | || |||| | |||||||| | | ||||| |||||||| | | |||| ||| Sbjct 139329 AGACATTGAGAATGGCG-CGCCTTATACGTCTTGCTCAGGAATCCACCAGCGGGCTGTCT 139271 Query 108490 GCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACA 108549 | |||| ||| | ||||||||| ||||||| || |||||||||||||||||||| || | Sbjct 139270 GTGTTTATGGGTCGGGGGACCTGCACTGGATACTTCAGAACCATCACCTCTTGGCCAATA 139211 Query 108550 AGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATA 108609 |||||||||| | |||||||||||| || || ||||| |||||||| || ||||||| | Sbjct 139210 AGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTTAGAAGAATATTTACGTCACA 139151 Query 108610 AGGCCATCTATGGGACTGAACTTTGAGCTGCACTGTGGGCC---AGGGAC---TGTGCC- 108662 | |||||||||||||||||||| |||| ||||| | | | || |||| | Sbjct 139150 AAGCCATCTATGGGACTGAACTATGAGACACACTGCAAGACGATTGTTACCTGTGTGGCA 139091 Query 108663 --AACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCA 108720 || ||| ||||| | |||||| | ||||||||| || | ||||| | || |||| Sbjct 139090 GGAAAATG-CCAGGACCTACTGGGGCAGTGTGGGGTAGGCAGCTGGGGCTCTAGACTCCA 139032 Query 108721 TGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 | | |||| ||| | || |||||||| Sbjct 139031 T-GTGTCCCTTAGGATGAGGGGGCTGCT 139005 >seq1723 Length=1657771 Score = 138 bits (152), Expect = 8e-28 Identities = 583/899 (65%), Gaps = 55/899 (6%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || | |||||||||| ||| ||| || ||||| || || || ||||| ||| | ||| Sbjct 465526 CCCCTTACTAAAGAAGAGGTAGGCTTTCCAATTGCATATTCCATAGTGGTTCATCATAAG 465467 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| ||||| | ||| |||||||| | ||||| | Sbjct 465466 ATTGAAATGCTTGACAGGCTCCTGAGAGCCATCTATATGCCTCAGAATTTCTACTGCATT 465407 Query 107808 CACGTGGATGTGAAGTCCCCAGAGA----CTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 |||||||| || | |||| |||| || | ||||| || |||| || Sbjct 465406 CACGTGGACAAAAAAGC---AGAGGAATCCTTTTTAA-ACGCGGTGCGGGGCATTGCATC 465351 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||| ||||||||| ||||||| ||||| || |||||||| |||||| Sbjct 465350 CTGCTTTGATAATGTCTTCGTGGCCAGCCGGTTGGAGAGTGTTGTTTATGCATCCTGGAG 465291 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| || | |||| | ||||| | ||| Sbjct 465290 TCGGGTTCAGGCTGACCTCAACTGCATGAAGGACCTG-TACAGAA-TGAGTGCAAGCTGG 465233 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || ||||| || || ||||| || || ||| Sbjct 465232 AAGTACTTGATCAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACTTGGAAATTGTC 465173 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAG 108098 | |||||| || | || |||||| |||| ||| || | ||||| | Sbjct 465172 AGGAAGCTCAAGTCCTTCATAGGGGAGAACAACCTGGAAACTGAGAAGATGCCTTCCAA- 465114 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTA---------TGAGGTGA--CAGAC--ACACT 108145 ||| || | | |||||| | | || ||| | || | ||| ||||| Sbjct 465113 --CAAGGAAGAGAGATGGAAAAAAAGATACGTCATCATTGATGGGAAGCTGACAAACACT 465056 Query 108146 GTACCCTACCAGCAAGATGAAGGAC--CCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | | || ||| ||| || ||| || || | || | || | || |||| Sbjct 465055 GGA--GTA--GGCA-----AAGCACAGCCT-CCGCTCAAAACT--CCTCTCTTTTCAGGC 465008 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATC 108262 | ||||| || |||| | | | | | ||| |||| | || || || || Sbjct 465007 AGCGCCTACTTCGTGGTCAGTAGGGAATATGTAGGCTATGTGCTGGAAAATGAAAATATT 464948 Query 108263 CCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCAC 108322 | |||| | | || |||| | ||||| |||||||| || || |||||||||||| Sbjct 464947 CAAAAG-TTCATGGAGTGGGCACAGGACACATATAGCCCAGATGAGTTCCTCTGGGCCAC 464889 Query 108323 CCTTCAGCGTGCTCCGTGGA-TGCCTGGCTCT-GTTCCT--AGCCACCCCAAGTATCACA 108378 | | || | | ||| | | ||||||||| | ||| ||||| |||||| || Sbjct 464888 CATCCAAAG-GATCCCCAAAGTCCCTGGCTCTCGCCCCTCAAGCCA---GAAGTATGACT 464833 Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA 108438 | || ||||||| || | || ||| | ||||||||||||||| ||| || ||||| Sbjct 464832 TGTCTGACATGAACGCTGTTGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGTGATGTTT 464773 Query 108439 GCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACG 108498 || || ||||||||| |||| ||| ||| | ||| | | || | ||| | | | Sbjct 464772 CCAACGGCGCGCCTTATCCACCATGCAGTGGTACCCACGTGCGCTCCGTGTGCGTGTTTG 464713 Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || || ||| || |||||| || || || || || | || || || ||||||||| Sbjct 464712 GAGCTGGTGACTTGAGCTGGATGCTGCACAAACACCATTTTTTTGCCAATAAGTTTGAC 464654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345893440159146