Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq42693 82.4 6e-11 >seq42693 Length=180072 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | ||||| |||||||| || ||| || || ||||| || || | || Sbjct 13195 AGATCTTCCCCTGATGGCATTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTGAA 13136 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || | || || || | || || | || | |||||||| ||||| || || || Sbjct 13135 TGGGGAGCTATCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGTCTGGGCGTGCCCTT 13076 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 ||| ||||| || ||||| ||||| || || |||||||||||| Sbjct 13075 CAACATTGCCAGCTATGCTCTGCTCACCTACATGATTGCACAT 13033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396461374135405