Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4803 116 3e-21 seq9385 84.2 2e-11 >seq4803 Length=331686 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| || || Sbjct 148742 ACCTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCACTTAATGGTT 148683 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || || || || || || |||||||||||||| || || Sbjct 148682 CCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTA 148623 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||| ||||| ||||| || Sbjct 148622 CCCGTCTCTGTCTGAGACTCAATGATGGC 148594 >seq9385 Length=230659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || ||||| || || |||| || | |||||||| || Sbjct 28331 ATGCAGATTTTTGTGAAGACCCTTACAGGGAAGACCATCATGCTCCAGGTTGAACCCTCG 28272 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | ||||| | || | || ||| ||| |||| | || || || || Sbjct 28271 GACACTATAGAAACTGGAAAGGCCAACATCCAGGATAAG-AAGGAATTCCTCCTGATGAG 28213 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT-CTATGACTATGAGCGATTATAA 31371 ||| | | || || ||||| || ||| ||||||| | || ||| || || || || Sbjct 28212 CAGAGGTTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCAT-ACTTTGTCTGACTACAA 28154 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT 31398 ||||||||| ||||| || |||||||| Sbjct 28153 CATTCAAAAGGAATCTACCCTTCATCT 28127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442648102441680