Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7634 87.8 4e-12 >seq7634 Length=216425 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 101909 GAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC 101968 |||| | |||| ||||||||||| || ||||| |||||||| |||| | || ||||| Sbjct 206336 GAACGAGTTGTGGCCTTTGCTGCGGTGGAAGGGATCTTCTTCTCTGGTTCTTTTGCATCG 206395 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || |||||| ||||||| |||| | |||| || || || | ||||||||| | ||| Sbjct 206396 ATATTCTGGCTCAAGAAACGGGGACTGATGCCAGGCCTTACGTTTTCCAATGAGCTTATT 206455 Query 102029 TCTAGGGACGA 102039 || ||||| Sbjct 206456 AGCAGAGACGA 206466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982488438725695