Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6625 140 4e-28 seq4803 127 3e-24 seq53456 118 1e-21 seq1495 116 5e-21 seq7634 111 2e-19 seq12971 87.8 2e-12 >seq6625 Length=435695 Score = 140 bits (154), Expect = 4e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | |||||| || || ||||| |||| ||| || |||||||| || Sbjct 252957 TTACTTTTTATTAACTGCTTCCAGAAACTTCAACAGGTGCAGGAAGAGGTTGATGATGTC 253016 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||||| | |||| | || | ||| || || || || ||||| | || || || || Sbjct 253017 CATGTAGAGACTGATGGCAGCCAGCACGTACTCCTCGGGAGAGAGTCTGTGCATCAGCGA 253076 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| ||||||||||| |||||||| ||||| | ||||| || | || | ||||||||| Sbjct 253077 GTGTGTGTCATAGATGATGAATCCACAGAAGAGGAGGGCGCCCACAGAGGCCAGGACCAG 253136 Query 9407 CTCCACTGTTTCACT 9421 |||||| || ||||| Sbjct 253137 CTCCACCGTCTCACT 253151 Score = 131 bits (144), Expect = 2e-25 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||| Sbjct 254618 CCTGCTCCAAATTTGGTGAAATCTCTCTTTGATTGTAGAGTATAGGCAGTCAAGCCAAGA 254677 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACA 9599 || |||||||| ||||| || || ||||||| ||| | | |||||||||||| || || Sbjct 254678 AAGACTGCAGTGGTCAGTATAAATGCTTGCAGAACCAGGTACACATCATAGAAGGTCACT 254737 Query 9600 ACAGA 9604 |||| Sbjct 254738 GCAGA 254742 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| |||||||| ||||||||||||||||||| ||||||| Sbjct 270704 CCATGCGGATGTGCACGCTGGCCGACGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 270763 Query 9907 TGGAGGAGCACGCGTAG 9923 ||||||||| | |||| Sbjct 270764 TGGAGGAGCGAGGGTAG 270780 >seq4803 Length=331686 Score = 127 bits (140), Expect = 3e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||||||||| |||||||| || |||||||| || || || | Sbjct 153631 ACCTGAAATTCTCCTGACAATACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 153572 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 153571 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 153512 Query 65301 CTATTTCT 65308 || ||||| Sbjct 153511 CTGTTTCT 153504 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 ||||| |||| || || || || || | || || ||||||||||| || || || | Sbjct 150270 GATCCCTCATACGTTTCATAGGGGCCATGCTCCTTGGCTAGTTCACAGCTGGCTTCCAGG 150211 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || || |||||||||||||| ||||| | |||||||| || ||||| |||| ||| Sbjct 150210 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA 150151 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||||| | | || || || || ||||||| || || || ||||| || || || Sbjct 150150 AAGGGATATCTCATCAGGATGAAAGCATCTGCTAGACCCTGTACCCCAATTCCAATGGGC 150091 Query 65592 CTATGTCTCTTATTAGAGAT 65611 | ||| | ||||| || || Sbjct 150090 CGATGGCGTTTATTTGATAT 150071 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 132105 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 132046 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | ||||| ||| | ||||| ||||| ||||||| Sbjct 132045 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCCGCTGTCTCGGCAGCCAGGGTGTCCA 131986 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| |||| | ||||| || || ||||| Sbjct 131985 GTTCCACTGTGGTGACCCCACTATACAGGCCTTGAATTACTTTCAT 131940 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| || | || || || |||||||| | Sbjct 157528 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATGGATGT 157469 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 157468 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 157409 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 157408 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 157358 >seq53456 Length=10349 Score = 118 bits (130), Expect = 1e-21 Identities = 294/455 (65%), Gaps = 51/455 (11%) Strand=Plus/Plus Query 9258 AACAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAG 9317 || || |||| ||| |||||||| ||||||| ||||| | |||| | ||||||| || Sbjct 7980 AAAAGGTGCAGGAAGAGATTGATAATATCCATGTAGAGACTGATGGCAGCTAACATGTAC 8039 Query 9318 TCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAAT 9377 |||| || ||||| | || || |||||||| | |||||||| |||||||| ||| Sbjct 8040 TCTTTGGGAGAGAGTCTGTGCATCAGTGAGTG--TTTCATAGATGATGAATCCACAGCCA 8097 Query 9378 ACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACTTTGCACAAATATCCTC 9437 | |||| | || | ||||||||||| | ||||| | | ||| | | || Sbjct 8098 AGTAGGGTGCTTGCAGTGTCTAAGACCAGCTCCATCATCTCACTATAAA-AAACACCATC 8156 Query 9438 AAAAGTCCTGACAAAATTAAAATCCACAAAGTAACAAACAAT-----CCTGCTCCAAGTT 9492 || | ||||| ||| |||||||| ||| | |||| | | |||||||||| || Sbjct 8157 AAGAATCCTGCCAAGCACAAAATCCA-AAACCAGCAAAAATTTGCTGCCTGCTCCAAATT 8215 Query 9493 TACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAG 9552 | ||| ||||| ||||| Sbjct 8216 TGATGACATCTC------------------------------------------CAGTAA 8233 Query 9553 TCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACAACAGAGGCCAGCG 9612 |||| || || ||||||| ||| | || ||||||||||| ||||||| || |||| | Sbjct 8234 TCAGTATAAATGCTTGCAGAACCAGATATACATCATAGAAGGTAACAATAGCTGCCACGG 8293 Query 9613 TTAGAGATTCCGACAGTGTAAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTC 9672 | || | ||| |||||||| || || | | ||| || | | ||| || || | |||| Sbjct 8294 TCAGGGCTTCTGACAGTGTGGATGCAAAGATCAGATAAAGGTACAGAGGCTGCATGTGTC 8353 Query 9673 TGTGTAAAGTCAATGCGAAAATCAAGCCTATAGAT 9707 |||| | ||||||||| || | |||||| | |||| Sbjct 8354 TGTGAAGAGTCAATGCAAAGACCAAGCCCAGAGAT 8388 >seq1495 Length=642193 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | ||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 168299 TCATCCCTGCTGATGAGTTCATTTGAAAAGGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 168240 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||| ||||| | |||||||||||||| ||||||||||||||||| || |||||||| Sbjct 168239 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 168180 Query 36302 ATAAGTCTCTCTCC 36315 | | ||| ||||| Sbjct 168179 ACCACTCTTTCTCC 168166 >seq7634 Length=216425 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | || ||||||||||| || || ||||| || || || || | Sbjct 206468 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCTGGCATCAGTCCCCGTTTCT 206409 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||| ||||| || ||||| || || ||||||| Sbjct 206408 TGAGCCAGAATATCGATGCAAAAGAACCAGAGAAGAAGATCCCTTCCACCGCAGCAAAGG 206349 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || ||||| Sbjct 206348 CCACAACTCGTTCTCC 206333 >seq12971 Length=450841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | ||||| ||||| ||||| ||||||||||| ||||| Sbjct 9298 ATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATCTCCGAGTGAATGTTTTCCATGGC 9239 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || || |||||||| | ||||| |||| || |||||| Sbjct 9238 AATCTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCT 9193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 653568642676360