Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq42693 105 6e-18 >seq42693 Length=180072 Score = 105 bits (116), Expect = 6e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 ||||||||||| || || |||| || || || || || |||||||| ||||| || || Sbjct 13021 CAGGCCCGTGATATGTGCAATCATGTAGGTGAGCAGAGCATAGCTGGCAATGTTGAAGGG 13080 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || || ||||| || | ||||||||||| |||||||| || |||||||| | Sbjct 13081 CACGCCCAGACCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGATAGCTCCCCATTCAC 13140 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||| || || ||||| | | || |||||||| | |||||| Sbjct 13141 CACATAGAATTGACAGAGGGCATGGCAAGGAGGCAATGCCATC 13183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424858363015920