Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7634 123 4e-23 seq4803 118 2e-21 seq1495 116 5e-21 seq12971 93.3 6e-14 >seq7634 Length=216425 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| || || ||||||||||| || || ||||| || || || || | Sbjct 206468 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCTGGCATCAGTCCCCGTTTCT 206409 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || ||||| |||||||| ||||| || || ||||||| Sbjct 206408 TGAGCCAGAATATCGATGCAAAAGAACCAGAGAAGAAGATCCCTTCCACCGCAGCAAAGG 206349 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||||| Sbjct 206348 CCACAACTCGTTCTCC 206333 >seq4803 Length=331686 Score = 118 bits (130), Expect = 2e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||||||||| |||||||| || |||||||| || || || | Sbjct 153631 ACCTGAAATTCTCCTGACAATACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 153572 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 153571 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 153512 Query 79180 CTATTTCT 79187 || ||||| Sbjct 153511 CTGTTTCT 153504 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| || | || || || |||||||| | Sbjct 157528 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATGGATGT 157469 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 157468 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 157409 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||| ||||| | | |||| | || || |||| Sbjct 157408 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 157358 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||||| |||||| || || || | ||||| ||| Sbjct 150261 TACGTTTCATAGGGGCCATGCTCCTTGGCTAGTTCACAGCTGGCTTCCAGGGCTCCATAA 150202 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || || | |||||| | || |||||| |||| ||||| ||||| Sbjct 150201 TAAATGGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCAAAGGGATAT 150142 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || || || || ||||||| || || || ||||| || || || | ||| | Sbjct 150141 CTCATCAGGATGAAAGCATCTGCTAGACCCTGTACCCCAATTCCAATGGGCCGATGGCGT 150082 Query 79480 TTATTAGAAAT 79490 ||||| || || Sbjct 150081 TTATTTGATAT 150071 >seq1495 Length=642193 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || || || || || ||||| || ||||| || ||||| ||||| ||||| | ||| || Sbjct 168299 TCATCCCTGCTGATGAGTTCATTTGAAAAGGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 168240 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | |||||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 168239 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 168180 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| ||||| Sbjct 168179 ACCACTCTTTCTCC 168166 >seq12971 Length=450841 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| ||||| || || | ||||| ||||| ||||| ||||||||||| ||||| Sbjct 9298 ATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATCTCCGAGTGAATGTTTTCCATGGC 9239 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || || |||||||| | ||||| |||| || |||||| Sbjct 9238 AATCTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTTGAACTTCT 9193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713244249371560