Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq56394 136 9e-27 seq1495 111 4e-19 seq32185 105 2e-17 seq11023 102 2e-16 seq4083 95.1 3e-14 seq32429 93.3 1e-13 seq4568 87.8 4e-12 seq4015 87.8 4e-12 seq57136 84.2 5e-11 >seq56394 Length=146557 Score = 136 bits (150), Expect = 9e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 |||||| ||||| || |||||| | | ||| || ||||| ||||| || |||||||| Sbjct 141291 TTCTTT-TGAATGTTCTAGTCAAACA-AGTATAGCCATCTTCCAGTTGCTTACCAGCAAA 141234 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || |||||||||||||||||||| |||||||| ||| |||| |||| | |||||||| Sbjct 141233 GATCAGCCTCTGTTGATCAGGAGGAATTCCTTCCTTAACCTGGCTCTTGGGCTTTACATT 141174 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||||| ||||| | ||| ||||| ||| | || |||| || |||| | || || Sbjct 141173 TTCTATAGTATCCAGGGATTCAACCTCAAGTATGATGATCTTCCCCATAAGGATATTCAC 141114 Query 104548 AAATATCTGCAT 104559 ||| |||||||| Sbjct 141113 AAAAATCTGCAT 141102 >seq1495 Length=642193 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||||| | || || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 168166 GGAGAAAGAGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCT 168225 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||| |||||||| ||||| ||| | || || || || ||| | Sbjct 168226 GCTATATTCTGGCTAAAGAAGAGAGGCCTCATGCCTGGACTGACCTTTTCAAATGAACTC 168285 Query 269246 ATAAGCAGGGACGAAG 269261 || |||||||| |||| Sbjct 168286 ATCAGCAGGGATGAAG 168301 >seq32185 Length=59521 Score = 105 bits (116), Expect = 2e-17 Identities = 132/180 (73%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 104380 ATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTG 104439 ||| |||||||| | ||| | || ||||| || ||||| |||||||| | | |||||| Sbjct 1485 ATTGTAGTCAGACAAAGTATTGCCATCTTCAAGCTGTTTACCAGCAAAGTTCAACCTCTG 1544 Query 104440 TTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 ||||||||||| |||||||| |||||||| ||| | || |||||||||||| || | Sbjct 1545 CTGATCAGGAGGCATTCCTTCCTTATCCTGGATCGTGGC-CTTACATTTTCTATAGTGAC 1603 Query 104500 GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| |||| || | | |||| || | | || || ||||| |||||||| Sbjct 1604 TAAGGGTTCAACCTTGAGCATGGTGATCTTCCCCATTATGGTCTTCACAAAAATCTGCAT 1663 >seq11023 Length=25446 Score = 102 bits (112), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || ||||| || ||||||| | | | | || | |||| Sbjct 16630 ACAAGATGAAGGGTAGACTCCTTTTGAATGTTGCAGTCAGACAAA-TACAGCCATTTTCT 16688 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 | || || |||||||| || | |||||| ||||||||||| ||||||| |||||||| Sbjct 16689 GGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAGTTCCTTCCTTATCCTGG 16748 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| | | ||||||||| || || ||||| | || || | || |||| Sbjct 16749 ATCTTGG---TCTCATTTTCTATAGTGTCCAAGGGTTCAATCTTGAGCATGATGATCTTC 16805 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||| ||||| || ||||| Sbjct 16806 CCCATTAGGGTTTTCACAAAAATTTGCAT 16834 >seq4083 Length=792805 Score = 95.1 bits (104), Expect = 3e-14 Identities = 116/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 104365 AGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGC 104424 ||| || || ||||||||| |||||| | ||| || | ||| || || || ||||| Sbjct 567316 AGAGTCCTTTTGAATATTA--GTCAGACAAAGTATGGCCCTTTTCCAGCTGCTTCCCAGC 567373 Query 104425 AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 ||| || ||| | || | ||||| ||| |||| ||||| |||||| ||||| |||||||| Sbjct 567374 AAAGATCAGCTTGTGCT-ATCAGAAGGAATTCATTCTT-ATCCTGGATCTTGGCTTTTAC 567431 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTG 104519 ||||||| || || ||||| ||||||| || Sbjct 567432 ATTTTCTCTAGTGTCCAAGGGTTCAACCTCTACTG 567466 >seq32429 Length=83959 Score = 93.3 bits (102), Expect = 1e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || |||||||| || | | || | ||||||||||| ||||||| Sbjct 65978 CCATCTTCCAGCTGCTTACCAGCAAAGATCAACGTCAGCTGATCAGGAGGAATTCCTTTC 65919 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 |||||||||||||| || ||||||||||||| Sbjct 65918 TTATCCTGAATCTTGGCCTTTACATTTTCTA 65888 >seq4568 Length=261157 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || ||||||||||| || || ||||| ||||| || |||||||| || || || ||| Sbjct 194918 GACTCTTTCTGAATGTTGTAATCAGAAAGAGTGTGGCCATCTTCTAGATGCTTGCC-GCA 194860 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGT----ATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || | |||| ||| || | || ||| | || |||||||| | ||||| || || Sbjct 194859 AAGGTGAGCCCCTGCTGTT--GGTGGTGGGGGTGCCCTCTTTATCTTACATCTTGGCCTT 194802 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | | | || ||||| || | ||||| || ||||| | | || || Sbjct 194801 CACATTCTCCATGATGTCACTAGGCTCAAATTCTAGGACGATGGTCTTGCTGGCCAGGGT 194742 Query 104542 TTTTACAAATATCTGCATTTTG 104563 || |||||||| ||||||||| Sbjct 194741 CTTCACAAATATTTGCATTTTG 194720 >seq4015 Length=481171 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/128 (76%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || ||||||||||| || | |||||| ||| | | || ||||| || | || |||||| Sbjct 114268 GAATCTTTCTGAATGTTGTGGTCAGACAGATTACAGCCATCTTCCAGCTTCTTACCAGCA 114209 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGG-TATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 ||| |||||| | || |||||||| |||| || |||||||| |||| | ||||| Sbjct 114208 AAATACAGCCTCAGCTGGTCAGGAGGAAATTCTCTCCTTATCCTGGATCTCAGTGTTTAC 114149 Query 104485 ATTTTCTA 104492 |||||||| Sbjct 114148 ATTTTCTA 114141 >seq57136 Length=63839 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| || ||||| || | | || || |||||||| | || | || ||||| | Sbjct 37235 AGATGAAAGGTAGACTCCATTGGGATGTTGTAGTCAGACAAAGCACGGCCATCTTCCGGC 37176 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || ||| | || ||||||| ||||||||| | |||||| | || ||| ||| Sbjct 37175 TGCTTACCTGCAGAGATCTGCCTCTGCCAATCAGGAGGAACTCCTTCCTCATGCTGCATC 37116 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 | || ||| ||||||||||| | ||||| ||| || | || | ||| || Sbjct 37115 TCGGCCTTTCTGTTTTCTACGGTGTTCAAGGGTTCAACCCTGAGCATGATGGCCTTCCCC 37056 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || ||||| |||||||| Sbjct 37055 ATAAGGGTCTTCACAAAAATCTGCAT 37030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1143142589580332