Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq13983 89.7 4e-13 >seq13983 Length=94873 Score = 89.7 bits (98), Expect = 4e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 127162 GGCTATTTAGGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATG 127221 || || || || |||||||| | || || ||||| ||||| ||||| | | || ||| Sbjct 50108 GGTTACTTGGGTTGCCAAGCCTTATCGGAAATGATCCAGTTTTACCTGGGGAAAGTAATG 50049 Query 127222 CCACAGGCAGAAAATCACGGACCC-GACATAAAAGAACACGTCAATTCCCTGGGTGAAAA 127280 || |||||||| || || |||||| || || || || || | ||||||||||| || || Sbjct 50048 CCCCAGGCAGAGAAACA-GGACCCAGAAATCAAGGAGCATTTGAATTCCCTGGGAGAGAA 49990 Query 127281 GCTGAAGACATTGAGACTTCGACTGCGTCGCTG 127313 ||||||||| | || | | ||||| ||||| Sbjct 49989 GCTGAAGACCCTCAGGATGCAGCTGCGCCGCTG 49957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427121223237848