Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq13983 122 9e-23 seq515227 91.5 2e-13 >seq13983 Length=94873 Score = 122 bits (134), Expect = 9e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196 || |||| ||| |||| || || ||| | || |||||||||||||||||||||| | ||| Sbjct 50113 TCTAGGGTTACTTGGGTTGCCAAGCCTTATCGGAAATGATCCAGTTTTACCTGGGGAAAG 50054 Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256 ||||||| ||||| || || |||||||| | ||| ||||| |||| || ||||| | Sbjct 50053 TAATGCCCCAGGCAGAGAAACAGGACCCAGAAATCAAGGAGCATTTGAATTCCCTGGGAG 49994 Query 10257 AGAATCTAAAGACCCTAAGG 10276 |||| || |||||||| ||| Sbjct 49993 AGAAGCTGAAGACCCTCAGG 49974 >seq515227 Length=625 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||| ||| |||||||| || || |||| | Sbjct 2 AGCTCCAAGATAAAGGTGTCTACAAGGCCATGAATGAGTTTGACATCTTCATCAACTGCA 61 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||||||||| ||||| ||||| Sbjct 62 TAGAAGCATACATAACCATCAAAAT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543550084071040