Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq19169 165 1e-35 seq4083 127 3e-24 >seq19169 Length=151675 Score = 165 bits (182), Expect = 1e-35 Identities = 208/286 (73%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || |||||||| || || ||| | |||| |||||||| || | ||| | ||||||||| Sbjct 20351 AAGGGACACCCCTTCACATTGTTGCAGATGAGAGACTGAATGGAGGCAGTGTTGACGATC 20292 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| ||||| ||||||||||| || |||||||| || || |||||| Sbjct 20291 TTAAAACCCACTTCTCCTCCGAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 20232 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||||| || || || || || | ||| |||| || ||| Sbjct 20231 TTACCCATAAGTCCTTTCAAAGAAAATGGCGCTCCAAGTTCTACCATGGTCTCCCCAAAG 20172 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | || || |||||||| |||| | ||| |||| |||| || |||||| Sbjct 20171 ATAGCATCTGGGCGAGGCTTTTCTACCAGCAGGGCGGGATACAGTTCCATGGCATCGATG 20112 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | | || ||||| |||||||| ||||||| Sbjct 20111 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCTG 20066 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 |||| || || ||| |||| || ||| || || || || |||| || | ||| |||| Sbjct 18904 TGGTTTGGAAGAGTCGTTCATCGTCCCACTCGGGGTGCTCCTGTTTGAGTATATCACACA 18845 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 |||||||||| |||| |||||||| ||||| |||||||| |||||||||||||| |||| Sbjct 18844 CTCTGTTGTGCTCCCGTAGCCAGATTGTAGCATACATCATCAGACCAGGCACCAGACCAA 18785 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | | || || || ||||| | |||| | || || | | ||||| |||||||| | Sbjct 18784 AGACTTCCTGCCCCACAGCAAACCGCAGGTGCTCAGGGATGTGAGGAGGGTAGATCATCT 18725 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 |||| |||||||| | ||| ||||||| Sbjct 18724 CTACCTCAGTGTCTTTGACTGTGGGAGGATACA 18692 Score = 109 bits (120), Expect = 8e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || || | | |||||||| || ||| | | Sbjct 16487 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCCGCTACCGGAGGAAGGGCCCTGGTG 16428 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| |||||||| |||||||||||| ||| |||||| | | ||||| | Sbjct 16427 TAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCGTAGTGCACATTGTAAGTT 16368 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || ||||||||||||| ||||| ||||| Sbjct 16367 GGTGGACTGTCAATCAAATGTGATCTGGCTGAA 16335 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||| || || ||||||||| ||||| | || |||||| | ||| ||| | ||| Sbjct 17483 CTTACTCCGTGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAAA 17424 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||| || || | || || |||||||| | || | ||| ||||||||| Sbjct 17423 AACTGGTGAGTGAAGTGCTGAGCGAAGAATGCAAACATCATATTTGAGCCTTGGGGATCG 17364 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCA 10182 || |||| |||| |||||| ||||||| Sbjct 17363 GGGATGAACTCTCTCCTTAGAAGAACCTTTTCCA 17330 >seq4083 Length=792805 Score = 127 bits (140), Expect = 3e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || || || || || || ||||||||||||||||| | || || |||||| ||| Sbjct 713627 AAACCAACATCACCACCAAACGTGCTGGGTTTCCAGTACTCTGGAGAACAGATGGGATTC 713568 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| ||||||||||| |||||||||| ||| | ||||| || || |||||| Sbjct 713567 CCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATCATGCTTTCCCCAAAGATG 713508 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| | | || | ||| ||||| | ||| ||||| || Sbjct 713507 GAGTTGGGCTGGCACTTTTCCAGAAGCAGCCCTGGGTAGAACTCTAAAGCATCGATATCA 713448 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 713447 CCGTACAG 713440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 703568412183760