Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9385 109 5e-19 >seq9385 Length=230659 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||||||||||||| | ||| || || || ||| | | ||| |||||||| || || Sbjct 28136 GTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGCTGCTTACCA 28195 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || || |||| ||| |||||||| ||||| || || | || || ||||| Sbjct 28196 GCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTC-TTATCCTGGATGTTGGCCTTT 28254 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 | | | | |||||| | | | || || | | | ||||||| || || ||||| || Sbjct 28255 CCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCTGTAAGGGTC 28314 Query 94991 TTCACAAAGATCTGCAT 95007 |||||||| |||||||| Sbjct 28315 TTCACAAAAATCTGCAT 28331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445155240550440