Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq239386 91.5 1e-13 seq1723 91.5 1e-13 seq97010 86.0 4e-12 >seq239386 Length=531 Score = 91.5 bits (100), Expect = 1e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| | |||||||||| |||| ||||||| | Sbjct 445 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATAGGTCTCGTGC 504 Query 20009 TAATATTTAGCCTTA 20023 |||||||||||| Sbjct 505 CGGTATTTAGCCTTA 519 >seq1723 Length=1657771 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 5/83 (6%) Strand=Plus/Plus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968 ||||||||||||| ||| |||||||| ||||| || ||||||||| |||| ||||| Sbjct 140547 TTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGAAAGTGGGAATCTCGTTCATCCATTCAT 140606 Query 25969 GCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||| Sbjct 140607 GCGTATCACTAATTAGATGACGA 140629 >seq97010 Length=932 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||| |||||||||| | |||||||||| ||||| ||||| Sbjct 712 CTCTCTCTTCAAAGTTCTTTTTAACTTTCCCTTAAGGTACTTGTTGACTATCAGTCTCAT 771 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 772 GCCGGTATTTAGCCTTA 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332662699844699