Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4069 87.8 1e-12 >seq4069 Length=665586 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||| ||||||| | || ||||| || || || | || ||||||||||||||| Sbjct 312519 AAGATCCAACACAAGGAAGTCATCCCACCTGACCAGCAGAGGCTGATATTTGCCGGCAAA 312578 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| | ||||| | ||| | |||||||| || ||||| |||||| | | Sbjct 312579 CACCTGGAGGATGGCTGCACCCTGTCCTACTACAACATCCAGAAAGAGTCCACCTTGTAC 312638 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || ||||| |||| || || Sbjct 312639 CTGGTGTTGCGTCTGCGAGGTGG 312661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416865254226385