Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4069 113 8e-20 seq25098 98.7 2e-15 seq21687 93.3 8e-14 seq6592 91.5 3e-13 >seq4069 Length=665586 Score = 113 bits (124), Expect = 8e-20 Identities = 126/167 (75%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| |||| || | ||||||||||| |||||||| || | ||| Sbjct 312661 CCACCTCGCAGACGCAACACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTAGGAC 312602 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || ||||| ||||| || || || ||||| ||||| Sbjct 312601 AGGGTGCAGCCATCCTCCAGGTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGG 312542 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||| ||||||||| ||| ||||| |||||||| ||| ||| |||| Sbjct 312541 ATGACTTCCTTGTGTTGGATCTTGGCCTTGACATTCTC-ATGATGTC 312496 >seq25098 Length=275577 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/199 (73%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGA--GTGTCCTCCCATCTTCTAACTGCTTCC 68322 ||||||||||| |||||||| || | ||| | || | ||||| || | ||| || | Sbjct 250287 GTGGACTCTTTCTGGATGTTGTAGTATAAGACCGGGTGCCACCATCCTCCAGCTGTTTGC 250228 Query 68323 CGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCT 68382 || || ||| || || || || | ||||| ||||||||||||||||| ||| | ||| Sbjct 250227 TGGTGACTATCAGCCTCTGATGTTAAGGTGGGATGCCTTCCTTGTCTTGGATCCTGTCCT 250168 Query 68383 TGACGGCCTCGATGGTGTCTGCTGATTCTACTTC-CAAG-GTGATGGTTTTTCCCGTGAG 68440 || | ||| ||||||| ||| || | || ||| ||||||||||| ||| | || Sbjct 250167 TGTCATTCTCAGTGGTGTC-ACTG-GGCTCCATCTTAAGAGTGATGGTTTTGCCCTTTAG 250110 Query 68441 GGTCTTGACGAATATCTGC 68459 |||||| | ||| |||||| Sbjct 250109 GGTCTTCATGAAGATCTGC 250091 >seq21687 Length=627521 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 154792 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 154851 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||||| |||||||| ||||| |||||||| Sbjct 154852 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 154895 >seq6592 Length=165981 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 68336 TCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGAT 68395 ||| || |||| ||||| ||||||||||||||||| ||||| |||| ||| |||||| Sbjct 157128 TCTCTGCAGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTGGACATTCTCGAT 157069 Query 68396 GGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 |||||| ||| | || || || | | |||||| || | || |||||||| ||||| | Sbjct 157068 GGTGTC-ACTGGTCTCGACCTCAAGAGCGATGGTCTTGGCTGTCAGGGTCTTCACGAAGA 157010 Query 68455 TCTGCAT 68461 |||||| Sbjct 157009 CCTGCAT 157003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915175317223880