Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4803 93.3 8e-14 seq1495 87.8 3e-12 >seq4803 Length=331686 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || |||||||| || || |||||| |||| | | ||| || || Sbjct 146575 CTTCATGAAGAGATCTGGGATCCAAAGTGCGAAGAAGAGATCCCGTGCTCGCTGTTCCTC 146516 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||||||||||||| ||| || | || ||||||| ||| | |||||| ||||||| Sbjct 146515 CTTGCCAGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGCTCCAG 146456 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||| | ||| | || || || |||| Sbjct 146455 GTAAATAGCAAATGCCCCTGGGCGCT 146430 >seq1495 Length=642193 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || |||||||| || | || || | || |||| Sbjct 168176 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCTGGATCATTTGCTGCTATATTCT 168235 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| || ||||| ||||| ||||| || || ||||||||||||||| Sbjct 168236 GGCTAAAGAAGAGAGGCCTC-ATGCCTGGACTGACCTTTTCAAATGAACTCATCAGCAGG 168294 Query 42825 GACGA 42829 || || Sbjct 168295 GATGA 168299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 937733204973040