Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq13983 107 2e-18 >seq13983 Length=94873 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||| | || ||||| ||| | || ||||||||||| || ||||||| | |||| | Sbjct 50110 AGGGTTACTTGGGTTGCCAAGCCTTATCGGAAATGATCCAGTTTTACCTGGGGAAAGTAA 50051 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| ||||| || || |||||||| ||| ||| || ||| | ||||| |||| || | Sbjct 50050 TGCCCCAGGCAGAGAAACAGGACCCAGAAATCAAGGAGCATTTGAATTCCCTGGGAGAGA 49991 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCGC 10009 | || |||||||| || | | |||||| Sbjct 49990 AGCTGAAGACCCTCAGGATGCAGCTGCGC 49962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548850345624160