Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9385 89.7 1e-12 >seq9385 Length=230659 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||||| || ||| ||||| || || ||||| | | || | || ||||| | Sbjct 28127 AGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAGC 28186 Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || || || || ||||||| | ||| | | | || |||||||||| ||||||||| Sbjct 28187 TGCTTACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTCTT-ATCCTGGATG 28245 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || || | ||||||||| || | ||| || | |||| |||| |||||||| Sbjct 28246 TTGGCCTTTCCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCCT 28305 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || |||||||| Sbjct 28306 GTAAGGGTCTTCACAAAAATCTGCAT 28331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1171195987093462