Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4803 89.7 6e-13 seq1495 89.7 6e-13 >seq4803 Length=331686 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||| ||| |||||||||| ||||| ||||||| || | ||||||||| || Sbjct 148740 CTCATCTTTACTGGTGTACTCTACTATTTCTGTACACAGGTTGCTGCACTTAATGGTTCC 148681 Query 114559 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 114618 || ||||| || || ||| |||||| | || ||||| ||||||||||| || || Sbjct 148680 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTACC 148621 Query 114619 CGTCTCCGTTTGGGACT 114635 |||||| || || |||| Sbjct 148620 CGTCTCTGTCTGAGACT 148604 >seq1495 Length=642193 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 126079 GATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138 |||||||||||| || ||| |||||| |||||||| || | |||||| | |||||| || Sbjct 168288 GATGAGTTCATTTGAAAAGGTCAGTCCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATAT 168229 Query 126139 CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||||| || |||||||| ||||| || ||| Sbjct 168228 AGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACA 168192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593174895027320