Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq34566 82.4 8e-11 >seq34566 Length=168407 Score = 82.4 bits (90), Expect = 8e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||| ||||||| || ||||||||||| | || | || | | ||||| ||||||||||| Sbjct 100406 GTCAATTCTTTCTGGATGTTGTAATCAGAGAGGCTGTGGCCATCTTCCAGCTGCTTGCCT 100465 Query 64307 GCATAAATGAGCCGCTGCTGGTC-GGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | ||| ||| ||||||||| | |||| || || ||||| || || || || Sbjct 100466 GCAAAGATGGGCCTCTGCTGGTCAGAGAGG-ATGCCCTCTTTATCCTGGATCTT 100518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496149603502760