Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq19169 176 6e-39 seq4083 100 4e-16 >seq19169 Length=151675 Score = 176 bits (194), Expect = 6e-39 Identities = 210/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||||||| || ||||| |||||||||| || || || ||||| Sbjct 20351 AAGGGACACCCCTTCACATTGTTGCAGATGAGAGACTGAATGGAGGCAGTGTTGACGATC 20292 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || ||||||||||| || |||||||| || || |||||| Sbjct 20291 TTAAAACCCACTTCTCCTCCGAAGGTGCTCGGCTTCCAGTATTGAGGAGAACAGATGGGA 20232 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || |||||||| ||||| || || || || || | ||| |||| || ||| Sbjct 20231 TTACCCATAAGTCCTTTCAAAGAAAATGGCGCTCCAAGTTCTACCATGGTCTCCCCAAAG 20172 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | || || || ||||| || | | | | | || ||||| | || |||| | Sbjct 20171 ATAGCATCTGGGCGAGGCTTTTCTACCAGCAGGGCGGGATACAGTTCCATGGCATCGATG 20112 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | |||||||||| |||||| ||||| || |||||||| ||| Sbjct 20111 TCACTGTAGAGGGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCT 20067 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 10383 GCTATCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCT 10442 ||| ||||||||||| || | ||||| ||||||||| | |||||||| || | || Sbjct 16491 GCTCTCACCTTTCACACCCATGGGAGTTGGGCAGTCATCCGCTACCGGAGGAAGGGCCCT 16432 Query 10443 CGTATAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTA 10502 || || ||||| || || || || ||||||||||| ||||| || || | | ||||| Sbjct 16431 GGTGTAGTAGGAGAGGTTGGAGAAGGCTTCCCAGCTTTTGTAACCGTAGTGCACATTGTA 16372 Query 10503 GAGCGGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 16371 AGTTGGTGGACTGTCAATCAAATGTGATCTGGCT 16338 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||| || || |||| |||| ||||| | ||||||||| | ||| ||| | ||| Sbjct 17483 CTTACTCCGTGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAAA 17424 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || ||||| || ||||| || |||| || || ||||||| || | ||| ||||||||| Sbjct 17423 AACTGGTGAGTGAAGTGCTGAGCGAAGAATGCAAACATCATATTTGAGCCTTGGGGATCG 17364 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCA 10275 ||||| || |||| | || ||| || |||| Sbjct 17363 GGGATGAACTCTCTCCTTAGAAGAACCTTTTCCA 17330 >seq4083 Length=792805 Score = 100 bits (110), Expect = 4e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || ||||| || || || || || |||||||||||||||||| | Sbjct 713645 GCTGTGTTAACAAGGTTGAAACCAACATCACCACCAAACGTGCTGGGTTTCCAGTACTCT 713586 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || |||||| ||| | | ||| || || | |||||| |||||||||| ||| || Sbjct 713585 GGAGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCCATCTCTATC 713526 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAG 9114 ||||| || || ||||||| ||| | ||||| | || | || || | ||||| Sbjct 713525 ATGCTTTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCCA-GAAGCAGCCCTGGGTAGAA 713467 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTC 9153 || | ||| |||| || || || || | |||||||| Sbjct 713466 CTCTAAAGCATCGATATCACCGTACAGCTCCTCCAACTC 713428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718665260288600