Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9385 113 1e-19 seq11023 96.9 8e-15 seq531388 89.7 1e-12 >seq9385 Length=230659 Score = 113 bits (124), Expect = 1e-19 Identities = 148/204 (73%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 199423 AAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAG 199482 ||| || || || || |||||||| | ||||||||||| |||||| ||||||||||| Sbjct 28126 AAGATGAAGGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATCTTCCAG 28185 Query 199483 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAAT 199542 |||||| || || ||||| | | ||||| || ||| |||||||||| ||||| || Sbjct 28186 CTGCTTACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTCT-TATCCTGGAT 28244 Query 199543 CTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602 || ||| | | ||| | ||||| | | ||| || | | | |||| ||||| || Sbjct 28245 GTTGGCCTTTCCAGTTTCTATAGTGTCCGAGGGTTCAACCTGGAGCATGATGGTCTTCCC 28304 Query 199603 CGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||||||||| || Sbjct 28305 TGTAAGGGTCTTCACAAAAATCTG 28328 >seq11023 Length=25446 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || || || ||||||||||| | |||| |||||| |||| | | Sbjct 16620 AAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGCAGTCAGACAAA-TACA 16678 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||| ||| ||||||| || || ||||| | | |||||| || ||| | ||||||| Sbjct 16679 GCCATTTTCTGGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAGTTCCTTC 16738 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| || | ||| | ||||| | ||| | | | | | Sbjct 16739 CTTATCCTGGATCTTGGTCT---CATTTTCTATAGTGTCCAAGGGTTCAATCTTGAGCAT 16795 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCC 199639 ||| |||| ||| | || ||||||||||||||||| ||| || ||| Sbjct 16796 GATGATCTTCCCCATTAGGGTTTTCACAAAAATTTGCATCATGTTGGCC 16844 >seq531388 Length=803 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 || |||||| ||||| || || | ||||||||||| | |||||||||| |||| | | Sbjct 117 GAGGTCTCAACACAAGATGAAGGATGGACTCCTTTTGAATATTGTAGTCAGGCAAAATAC 58 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526 ||||||||||||||||| || || ||||| | | |||||| || ||| ||||| Sbjct 57 AGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1170468441450143