Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4069 82.4 9e-11 >seq4069 Length=665586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | |||||||||||| | ||| || ||| || ||||| ||||||| || Sbjct 312663 TGCCACCTCGCAGACGCAACACCAGGTACAAGGTGGACTCTTTCTGGATGTTGTAGTAGG 312604 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||| | || || || || |||||||| ||||||| | ||||||||| | | Sbjct 312603 ACAGGGTGCAGCCATCCTCCAGGTGTTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTG 312544 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | | ||||||| |||||| ||||| Sbjct 312543 GGATGACTTCCTTGTGTTGGATCTTGGCCTTGA 312511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561284352493080