Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq34566 84.2 2e-11 >seq34566 Length=168407 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || |||||||| || | | | ||||| ||| ||| ||| | || ||||| Sbjct 100518 AAGATCCAGGATAAAGAGGGCATCCTCTCTGACCAGCAGAGGCCCATCTTTGCAGGCAAG 100459 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | | || |||| || ||||||||||| || ||| ||| ||||| Sbjct 100458 CAGCTGGAAGATGGCCACAGCCTCTCTGATTACAACATCCAGAAAGAATTGACCCTGCAC 100399 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || || ||||||| ||| Sbjct 100398 CTGGTCCTCGGTCTGAGAGGTGGC 100375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496673909951360