Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3787 107 8e-18 seq20595 98.7 4e-15 seq2089 84.2 9e-11 >seq3787 Length=754536 Score = 107 bits (118), Expect = 8e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || ||||| |||||||| | || || || ||||| Sbjct 58281 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGACAGGCAACA 58222 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | ||||| ||||||||||| |||||||| || || Sbjct 58221 AAAGATGCTGGAACTATTGCTGGCCTCAATGTACTTCGAATTATCAATGAACCAACGGCT 58162 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 58161 GCTGCTATTGCGTATGG 58145 >seq20595 Length=81188 Score = 98.7 bits (108), Expect = 4e-15 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 451305 GTTCTCCA--GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 ||||||| ||||| ||||||| ||||||| || ||||| ||||||||||| ||||| Sbjct 48156 GTTCTCCTAGGTTACCCATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAACG 48215 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 ||||||||| |||||||| || ||||||||| | ||||| | | || || ||||| Sbjct 48216 GCAAGCAACCAAAGATGCTGGCACTATTGCTGGGCTGAATGTCATGAGGATCATCAATGA 48275 Query 451423 ACC 451425 || Sbjct 48276 GCC 48278 Score = 84.2 bits (92), Expect = 9e-11 Identities = 127/178 (71%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 451426 TACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTAT 451485 ||||||||||||| | |||||||| || | || || ||| | || ||||| || || Sbjct 48370 TACAGCAGCTGCTATTGCATATGGCCTGG----AT-AAGAGAGAGGGA-GAAAAGAACAT 48423 Query 451486 TTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG 451545 | || ||||| | ||||| ||||| ||| ||| | || | ||||| |||| Sbjct 48424 CCTTGTGTTTGACCTGGGTGGTGGAACCTTCGATGTCTCTCTTCTCACCATTGACAATGG 48483 Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || |||||||| ||| || ||||| ||||||||||| || || ||||| ||||| Sbjct 48484 TGTCTTTGAAGTGGTGGCCACTAATGGAGATACTCATCTGGGTGGGGAAGACTTTGAT 48541 >seq2089 Length=1309725 Score = 84.2 bits (92), Expect = 9e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478 |||||| || | | |||||| ||||| | || ||||| | ||| || | | |||| || Sbjct 803051 ATATGCCTCGGCGACTTCTTTGAATTTCCGCTCTGCTTCCTCTTTATTTTCTGGATTTTT 802992 Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTCT 127527 ||||||||| ||||| |||| ||||||||||||| ||||||| ||| Sbjct 802991 ATCAGGATGCCATTTAAGTGCTACTTTACGGTAAGCTCTTTTAATATCT 802943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1961552011933932