Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq537433 114 1e-19 seq3787 104 2e-16 seq4911 93.3 3e-13 seq30574 89.7 4e-12 seq20595 89.7 4e-12 seq41325 87.8 1e-11 seq12905 86.0 5e-11 >seq537433 Length=909 Score = 114 bits (126), Expect = 1e-19 Identities = 419/641 (65%), Gaps = 19/641 (3%) Strand=Plus/Plus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| ||||| || ||||| | |||| ||| | || | | |||| |||| | Sbjct 191 TTGTCAAAGTCTTCTCCACCCAAGTGGGTATCTCCAGCTGTTAATTTGACTTTAAAAATT 250 Query 518084 CCATCTTCAAGAGACAAAAGAGTT---ACATCATGGGTTCCACCACCCATATCAAAAATA 518140 |||| |||| || ||| || |||||| || || | |||| ||||||||| Sbjct 251 CCATTCTCAAT---CATAAGGATTGATACATCAAAAGTGTCATCTCCCAAATCAAAAATC 307 Query 518141 AGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 518198 || |||||| ||| | || || || |||| | |||| |||| |||||| ||| Sbjct 308 AGCACATTCCTTT--TAGTTCTGACCTTCTTATTTAAGTCATAAGCAAGAGCAGCCACAG 365 Query 518199 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 518258 |||| ||||| |||||| | || || ||||||||||| |||| ||| |||| || | Sbjct 366 TTGGCTCATTGATAATTTGAAGTACTTTGAGACCAGCAATAGTTCCAGCAACTTTTGTTG 425 Query 518259 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCT 518317 | || | | || || | ||||| || || || || | | ||||| || || ||| Sbjct 426 C-TGCCCCCGAGAGTCATGGAAATA-GCTGGCACTGTGACTATGGCATTGGTAACAGTCT 483 Query 518318 TTACCAATATAAGCGCTTGCCGTTT-GTTTCATTTTACTTAAAATCATTGATGAAATTTG 518376 || | || |||| | | ||| || ||| || | | || ||||||||| | || Sbjct 484 TT-CAAAGGTAAGATTCTACAATTTCCTTCCATCTTTGTCAGAACCATTGATGATACTTC 542 Query 518377 TTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 518436 ||||||| | | || || | | || ||| |||| | | || | | Sbjct 543 TTCTGGGTAGAAATGTTTTCTTGCCCCTTTGTATTCAACTTGGACCTTAGGCCTGCCTGC 602 Query 518437 AACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496 | |||| | | |||||||||||| ||||| || || | ||||| ||| | || Sbjct 603 ATCATTTACCATGATAAATGGCCAGTGCTTCATGTCAGACTAAACACCAGCATCA-TCAA 661 Query 518497 ATCTCT-ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTT 518555 |||| | || || | | ||| |||||||||| || ||||| | || |||||| | | Sbjct 662 ATCTATGTCCGATCAGACATTTGGCATCAAAAACTGTGTTGGTCTGCTTCATTGCAACCT 721 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA- 518614 | | ||||| |||| ||||| |||||||| || | || | |||||| | | | Sbjct 722 GCTTCTTGGCCACATCCCCAATTCATTGTTCTGTGTCAATGAAAGCAACATA-GTTCCAC 780 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTT 518655 | |||| ||||| || ||| | | ||| ||||| || || Sbjct 781 ATGGTGCAGTTACCCTGGTCACTAGAAATTATTTCCACCTT 821 >seq3787 Length=754536 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | |||||||||| ||||||||| ||||||||||| ||||||| | ||| Sbjct 58133 TTCTTATCTAAGCCATACGCAATAGCAGCAGCCGTTGGTTCATTGATAATTCGAAGTACA 58192 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| |||| |||||||| || || |||| || || || || || || Sbjct 58193 TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTAA 58252 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 58253 GCTGGCACTGTGACCACAGCAT 58274 >seq4911 Length=248699 Score = 93.3 bits (102), Expect = 3e-13 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || ||||||| |||||||| ||||||||| |||| ||| | ||||| | Sbjct 209687 AAGGGCCAGTGCTTCATATCAGATTGAACAACAGCATCATCAAACCTACATCCAATCAGA 209746 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGA-TTAATTGCAGCTTGATATTTGGCTGCATC 518571 |||| |||||||||| | ||| |||| || |||||| | ||| ||||||||||| Sbjct 209747 TGTTTGGCATCAAAAAATCTGTTGCTTGGGGTTCATTGCAACCTGAGTCTTGGCTGCATC 209806 Query 518572 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 518631 ||||| | |||||| || || || | |||||| ||| | ||| | ||||| || Sbjct 209807 CCCAATTAATCATTCTGTGTCAGTGAAAGCAACATAGCTTGGCATGGTGAGGTTACCCTG 209866 Query 518632 ATCATTCGCAATAATTT-CAACTTTACCAT 518660 ||||| |||| |||| ||||||| |||| Sbjct 209867 GTCATTGTCAATTATTTCCAACTTT-CCAT 209895 >seq30574 Length=102112 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || |||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 81178 TGTTGTAGCTACTGTAGCTTTTGGGATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 81237 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||| ||||| || || ||| | || ||| || || || |||||||||||||| || || Sbjct 81238 TCACTATGGTGCACCTAAGGAAATGGAATCCTACTACCAGGAAATTGGTAGAGCTGGCCG 81297 Query 367113 TGATGGA 367119 ||||||| Sbjct 81298 TGATGGA 81304 >seq20595 Length=81188 Score = 89.7 bits (98), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGCGGCAGTCACATT 517269 ||| ||||| || || || || ||||||| || ||| || | || ||||| Sbjct 50131 ATTGGTAATTGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCCTCAGCTGTCACTCG 50075 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 |||||||||||| |||| | ||||| ||||||||||| || || || || | |||| Sbjct 50074 AAGAATACCATTAACATCTATCTCAAAGGTGACTTCAATCTGGGGAACTCCACGGGGAGC 50015 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 ||| || || || || || ||||||||||||| || ||| ||||| || | ||| Sbjct 50014 AGGAGGAATTCCAGTCAGATCAAATGTTCCCAGAAGATGATTGTCTTTTGTTAGGGGTCG 49955 Query 517390 TTCACC 517395 |||||| Sbjct 49954 TTCACC 49949 >seq41325 Length=179352 Score = 87.8 bits (96), Expect = 1e-11 Identities = 177/258 (69%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 517507 ACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA- 517565 ||| || ||||| | ||||| ||| ||| ||||||||| | || | | || |||| Sbjct 22755 ACCAGCAGTTTCAATGCCAAGGGAATGAGAAGTGACATCCAAGAGCAACAAATCCTGAAC 22814 Query 517566 -GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 | ||| || | | ||| ||||| || | || ||| ||| |||| |||||| Sbjct 22815 AGATTTGCAGATTTGTCTCCAGATAGAATGTCTACCTGGTCAGCTGCATCATAAGCAACA 22874 Query 517625 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 517684 ||||||||||| |||| | ||| |||| ||| | |||||| || | | |||||| Sbjct 22875 GCTTCATCAGGGTTAATGCTACTATTCAGTTCTTTCCAATTGAAGAAGTCTTGCAGAAGT 22934 Query 517685 TGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 517743 | ||| | ||| ||||| | | || |||||||| || |||| ||||| | |||||| Sbjct 22935 T-TCTGAATCTTGGGAATCCTGGTAGAGCCTCCAAC-AAAACAAGCTCATGTATCTGTGA 22992 Query 517744 TTTATCCAGTTTTGAATC 517761 || | ||||| | ||| Sbjct 22993 CTTGACTAGTTTGGCATC 23010 >seq12905 Length=164903 Score = 86.0 bits (94), Expect = 5e-11 Identities = 209/312 (67%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 ||| ||||| ||||| || ||||| | | | ||| | || | | | |||| |||| Sbjct 164295 ATTGTCAAAGTCTTCTCCACCCAAGTGGTTGTCTCCAGCTGTTGATTTGACTTCAAAAAT 164354 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACAT--CATGGGTTCCACCACCCATATCAAAAATA 518140 || ||| |||| || ||||| | |||| || || | ||| |||| | ||| ||| Sbjct 164355 TCTATCCTCAATAGT--AAAGATTGACATATCAAAAGTGCTACCTCCCAAGTAAAATATA 164412 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || |||| | |||| | || ||||| | ||||| |||| ||||| | ||||| Sbjct 164413 AGCACATCCCTTTCAGCTCCAACCTTCTTATCTAAGCCATAAGCAATAGCAGGAACAGTT 164472 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 |||||||| |||||| ||||| || |||||||| || | | |||||| || || Sbjct 164473 GGTTCATTGATAATTTGATGTACATTGAGGCCAGCAATAGTTGCAGAATCTTTTGTTGCC 164532 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTT 518319 || || || || || || || || || || || || |||| || || ||||| Sbjct 164533 TGGTGCTGAGAGTCATTGAAGTAAGCTGGCACTGTGGATACAGCATTGGTAACAGTCTTT 164592 Query 518320 ACCAATATAAGC 518331 |||| ||||| Sbjct 164593 -CCAAGGTAAGC 164603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3753051765602074