Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq17266 318 7e-82 seq12905 120 4e-22 seq3787 116 5e-21 seq434954 111 2e-19 seq537433 107 2e-18 seq507799 107 2e-18 seq41325 104 3e-17 >seq17266 Length=418531 Score = 318 bits (352), Expect = 7e-82 Identities = 843/1272 (66%), Gaps = 38/1272 (3%) Strand=Plus/Minus Query 6896 GGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCA 6955 || ||||| || |||||| || | |||||||| | || || ||||||| ||| Sbjct 59783 GGGATCGTGGTGTTTCTCTTGATGAGTGGGGTCATGACGCCGCCAGCTGTTTCGATGCCA 59724 Query 6956 AGAGACAGAGGTGTCACGTCCAAGAGTAACAGG---TCTTGAACAGATTCGTTCC--CTT 7010 || |||| || |||||||| ||||||||| || || ||| ||| ||| ||| Sbjct 59723 AGCGACAATGGAGTCACGTC---GAGTAACAGCAGATCCTGCACA--TTC--TCCGACTT 59671 Query 7011 --CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 | || | | ||| || || || || | || || || || |||||||| ||||| || Sbjct 59670 GTCGCCAATGAGGATAGCCGCCTGCACAGCGGCGCCATAGGCCACCGCCTCGTCGGGATT 59611 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || | || ||||| || || || || || ||||| | | | || || || || Sbjct 59610 GATGCTCTTGTTCAGCTCCTTGCCATTGAAGAAATCCTGCAGGAGCTTCTGGATCTTAGG 59551 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || || || || || |||| ||||| || | | | || || | ||| | Sbjct 59550 GATGCGGGTGGAGCCGCCCACCAGCACGATCTCCTGGATCTGGCCCTTGTCTAGCTTGGC 59491 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAG 7245 || || || | ||||| || || |||| | | | ||||| | || || Sbjct 59490 ATCGCGCAGCGCCTTTTCCACCGGCTCCAGGGTCCCT---CGGAAGAGATCGGCGTTGAG 59434 Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305 ||||| || || || ||||| ||||| || |||||||| ||||| ||||| | ||| || Sbjct 59433 CTCCTCGAAGCGGGCGCGGGTGATGGACGTGTAGAAATCCACGCCCTCGTAGAGCGAGTC 59374 Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 || || ||| | | || | | ||| | || ||||| |||||||| || || || Sbjct 59373 GATCTCGATGCTGGCCTGCGTGGACGAGCTCAGGGTGCGCTTAGCGCGCTCGCAGGCGGT 59314 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 || | || || | || ||| ||| ||| || ||||| ||||| || || || Sbjct 59313 GCGCAGCCGGCGCACAGCGCGCTTGTTGGGCCCAATGTCCTTCTTGTGTTTGCGCTTGAA 59254 Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 ||| || | | ||| | | | | ||||| ||||| ||||||| ||| || || Sbjct 59253 CTCCTCCGCCAGGTGGCTGACCATACGGTTGTCGAAGTCTTCGCCACCCAGGTGGGTGTC 59194 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || || || | || || |||||||| || | || ||| | | | || ||||| || Sbjct 59193 GCCGGCCGTGGACTTCACCTCAAAGATGCCGTCCTCGATGGTCAGAATGGACACATCGAA 59134 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTT 7599 || || || ||||||||||| ||||| |||||| | ||| || | | ||||| Sbjct 59133 GGTGCCCCCGCCCAGGTCAAAGATGAGCACGTTCTTCTCGCCGCCCGCGCAGCCCTTCTT 59074 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCA 7658 ||| || ||||| ||||| ||||| || || || ||||| || || || || ||| || | Sbjct 59073 ATCCAGGCCGTAGGCGATGGCCGCGGCTGTGGGCTCATTGATGATGCGCAACACA-TTGA 59015 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||| | || || ||||||| || || || || || ||||| ||||| || ||||| | Sbjct 59014 GGCCGGTGATGGTGCCCGCATCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAATAGGCAG 58955 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||||||| | || || || || || | ||| ||||| || |||| Sbjct 58954 GAACAGTGATGACCGCGCTCTGCACCTTGCCCCCCAGGTAGGCTTCGGCGATCTCCTTCA 58895 Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTA 7837 | || || || ||||| || |||||||| || | | | | || ||| | || || ||| Sbjct 58894 TCTTAGTGAGGACCATGGAAGAAATCTCCTC-GGGGAAGAAGGTCTTCATCTCCCCTTTA 58836 Query 7838 AAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCT 7897 | || || | | |||| || | || | || | || | ||| ||| | Sbjct 58835 TATTCCACCTGCACTTTGGGCTT---CCCACCTTCGCTCACCACTCTGAACGGCCAGTGC 58779 Query 7898 TTCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATC 7956 ||||||||| || | |||| | |||| ||||| | |||||| || ||||| || || Sbjct 58778 TTCATATCGGACTGCA-CTGTGGCGTCCTCGAACTTCCGTCCGATCAGCCGCTTGGCGTC 58720 Query 7957 AAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACG 8016 || | |||||| ||||||||||||| ||||||||| || ||||| ||||| || || Sbjct 58719 GAAGATGGTGTTTGTGGGGTTCATGGCCACTTGGTTCTTGGCGGCGTCGCCGATGAGGCG 58660 Query 8017 TTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGC 8076 || | || || || || ||||| ||||| || || || || || ||||| || Sbjct 58659 CTC---GGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTACCCTGATCGTTGGC 58603 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 || || || || | | | ||| |||| || |||||||| || || || || | || Sbjct 58602 GATGATCTCCACCTTGCCATGTTGGAAGACCCCCACGCACGAGTAAGTGGTGCCCAGGTC 58543 Query 8137 AATACCGATTGC 8148 || ||||| || Sbjct 58542 GATGCCGATAGC 58531 >seq12905 Length=164903 Score = 120 bits (132), Expect = 4e-22 Identities = 190/270 (70%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| | || || || || | |||||||||||| || | Sbjct 164299 TCAAAGTCTTCTCCACCCAAGTGGTTGTCTCCAGCTGTTGATTTGACTTCAAAAATTCTA 164358 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || | |||||| || | ||| |||| || ||| || || || Sbjct 164359 TCCTCAATAGTAAAGATTGACATATCAAAAGTGCTACCTCCCAAGTAAAATATAAGCACA 164418 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | | || | | |||||||| | || || || ||||| | | ||||||||| Sbjct 164419 TCCCTTTCAGCTCCAACCTTCTTATCTAAGCCATAAGCAATAGCAGGAACAGTTGGTTCA 164478 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || ||||| || | ||| || ||||||||||||||||| | |||||| || || || | Sbjct 164479 TTGATAATTTGATGTACA-TTGAGGCCAGCAATAGTTGCAGAATCTTTTGTTGCCTGGTG 164537 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 || || || || ||||| || || || || Sbjct 164538 CTGAGAGTCATTGAAGTAAGCTGGCACTGT 164567 >seq3787 Length=754536 Score = 116 bits (128), Expect = 5e-21 Identities = 112/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 |||||||| | || ||||| ||||| || |||||||||||||| ||||| ||||| ||| Sbjct 58133 TTCTTATCTAAGCCATACGCAATAGCAGCAGCCGTTGGTTCATTGATAATTCGAAGTACA 58192 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || ||||||||||||||| | |||||||| || || ||||| || || || || ||||| Sbjct 58193 -TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAGTCATTGAAGTA 58251 Query 7714 GGCCGGGACCGTTACGACCGC 7734 || || || || || || || Sbjct 58252 AGCTGGCACTGTGACCACAGC 58272 >seq434954 Length=317 Score = 111 bits (122), Expect = 2e-19 Identities = 181/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT 7599 |||||| || ||||| |||| ||||||||| | || || | || | | ||||| Sbjct 1 ATCAAAAGTGCCACCTCCCAAGTCAAAAATCAACACACTCCTTTCAGCTCCCACTTTCTT 60 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 ||| | || || | |||||| || || |||||||| | ||||| |||| || || Sbjct 61 ATCTAAGCCATAAGTGATAGCAGCAGCATTTGGTTCACTGATAATTTGAAGTGCATTGAG 120 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 ||||||||||||| | ||| |||| || || || | || || || || |||||||| || Sbjct 121 GCCAGCAATAGTTCCAGCACCTTTTGTTGCCTGCCACTGTGAGTCATTGAAGTAGGCTGG 180 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || || || || || | || || |||| || ||| ||| || || || |||| Sbjct 181 CACTGTGACCACAGCATTGGTAACAGTCTTTTAAAGGTACACTTCTGCAATTTCCTTCAC 240 Query 7780 TTTGGTAAGAACCATCGATGA 7800 || || |||||||| || || Sbjct 241 CTTTGTCAGAACCATTGAGGA 261 >seq537433 Length=909 Score = 107 bits (118), Expect = 2e-18 Identities = 265/395 (67%), Gaps = 9/395 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| ||||| || || || |||||||| ||| || || Sbjct 194 TCAAAGTCTTCTCCACCCAAGTGGGTATCTCCAGCTGTTAATTTGACTTTAAAAATTCCA 253 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | | || |||||||| || || | |||| |||||||| || || Sbjct 254 TTCTCAATCATAAGGATTGATACATCAAAAGTGTCATCTCCCAAATCAAAAATCAGCACA 313 Query 7577 TTCGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | | | || | || ||||||| | | || || | ||| ||| | ||||| Sbjct 314 TTCCTTT--TAGT-TCTGACCTTCTTATTTAAGTCATAAGCAAGAGCAGCCACAGTTGGC 370 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 ||||| ||||| |||| || || |||||||||||| | ||| |||| || || || Sbjct 371 TCATTGATAATTTGAAGTACTTTGAGACCAGCAATAGTTCCAGCAACTTTTGTTGC-TGC 429 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | | || || | || || || || || || || | || | || || |||| | Sbjct 430 CCCCGAGAGTCATGGAAATA-GCTGGCACTGTGACTATGGCATTGGTAACAGTCTTTCAA 488 Query 7754 AGATACGATTCCGCGATAT-CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 || || ||||| | || | ||| ||| || || |||||||| ||||| | ||||| | Sbjct 489 AGGTAAGATTCTACAATTTCCTTCCATCTTTGTCAGAACCATTGATGATACTTCTTCTGG 548 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTT 7847 || ||||| || | || || | ||||||| Sbjct 549 GTAGAAATGTTTTCTTGCCCCTTTGTATTCAACTT 583 >seq507799 Length=571 Score = 107 bits (118), Expect = 2e-18 Identities = 189/268 (71%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 || ||| |||| || ||||| |||| ||||||||| || || || | || | ||| Sbjct 350 GACACACCAAAAGTGCCACCTCCCAAGTCAAAAATCAGCACACTCCTTTCAGC-TCTGAC 292 Query 7595 -TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-AC 7652 |||||||| | || || || ||||| || ||| |||||||||| ||||| |||| || Sbjct 291 CTTCTTATCTAAGCCATAAGCAATAGCAGCAGCCATTGGTTCATTGATAATTGGAAGTAC 232 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 | || ||||||||||||||| | | |||||| || || || | || || || || |||| Sbjct 231 A-TTGAGGCCAGCAATAGTTCCAGTATCTTTTGTTGCCTGCTGCTGAGAGTCATTGAAGT 173 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 | || || || || | | | | || | |||| ||||| || | ||| | || Sbjct 172 AAGCTGGCACTGTGAACATGGTATTGGTAATAGTCTTTCCGAGGTATGCTTCTG---TA- 117 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGA 7800 |||||| || || |||||||| || || Sbjct 116 ATTTCATCTTTGTCAGAACCATTGAGGA 89 >seq41325 Length=179352 Score = 104 bits (114), Expect = 3e-17 Identities = 232/342 (68%), Gaps = 5/342 (1%) Strand=Plus/Plus Query 7470 CACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC-TCCTTCAATGTTT 7528 |||| ||||| || || || | || | |||||||||||| || || ||||| ||||| Sbjct 23410 CACCAAAGTGGGTGTCTCCAACTGTTGATTTGACTTCAAAAATTCCATCCTT-AATGTG- 23467 Query 7529 AACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCG 7588 || | || |||||||| |||||| | |||| ||||||||| ||||| || | || | Sbjct 23468 AAGACTGACACATCAAAAGTACCATCCCCCAAGTCAAAAATTAGTACATTTCTTTCAGCT 23527 Query 7589 TCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGA 7648 | || |||| | ||| || | ||||| | ||||||| || || || | | Sbjct 23528 CCAACCTTATTATTTAAACCATAATCAATAGCAACAAGAGTTGGTTTGTTGATCATTCAA 23587 Query 7649 AG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 || ||| || | |||||||||||| | |||||||| || || | | | | || || Sbjct 23588 AGTACA-TTGTGACCAGCAATAGTTCCAGCATCTTTTGTTGCCTAGCACTAAAAGTCATT 23646 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 ||||| || || || || || | || | || || |||| || || || | || | | Sbjct 23647 GAAGTAAGCTGGCACTGTGACCATGGCATTAGTAACAGTCTTTCCAAGGTAAGTTTTCAC 23706 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | || ||||| || || | |||||| || || | ||||| Sbjct 23707 AAACTCCTTCATCTTTGTCAAAACCATTGAGGACACTTCTTC 23748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630689815828360