Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq38934 89.7 4e-13 >seq38934 Length=5967 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 407 TGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATC 466 |||||||||||| || || |||||||| || || ||||||||||| || ||| | | Sbjct 4415 TGCCCACTTCTGGAAGGTCCCATCTCCTGCAGGCCTGGTTTCCACAAGCTCCATGTCCTG 4474 Query 467 AGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGT 526 ||||| | ||| | || | ||||| || ||||| ||||| ||||| |||||||| Sbjct 4475 GGTCAGGTCCTCCCCATCCCTTTGCCAGGTCATGGTTATGTCAGCAGGGTAGAAGCCCAG 4534 Query 527 GGCCCAACA 535 |||||| || Sbjct 4535 GGCCCAGCA 4543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395034373798824