Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq531388 89.7 1e-12 >seq531388 Length=803 Score = 89.7 bits (98), Expect = 1e-12 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAGTTCTC 194982 ||||||| ||||| ||||| ||||||| |||||||||||||| || ||||| | | | Sbjct 114 GTCTCAACACAAGATGAAGGATGGACTCCTTTTGAATATTGTAGTCAGGCAA-AATACAG 56 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 |||||||| |||||||| || || ||||| | | || || || |||||||| Sbjct 55 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGAGGAAT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101526343371443