Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1495 125 8e-24 seq7634 105 7e-18 seq4803 98.7 1e-15 >seq1495 Length=642193 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || || || || || | |||||| ||||| || | |||||||| || ||||| || ||| Sbjct 168299 TCATCCCTGCTGATGAGTTCATTTGAAAAGGTCAGTCCAGGCATGAGGCCTCTCTTCTTT 168240 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| ||||||||||||||| ||||| || |||||||| || ||||| || Sbjct 168239 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 168180 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||||||| Sbjct 168179 ACCACTCTTTCTCC 168166 >seq7634 Length=216425 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | ||||| ||||| || | || ||||||||||| | ||| | Sbjct 206468 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCTGGCATCAGTCCCCGTTTCT 206409 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||| ||||| || ||||| || || ||||| | Sbjct 206408 TGAGCCAGAATATCGATGCAAAAGAACCAGAGAAGAAGATCCCTTCCACCGCAGCAAAGG 206349 Query 19103 CAACTAGTCTTTCTCC 19118 | || | || |||||| Sbjct 206348 CCACAACTCGTTCTCC 206333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/147 (75%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCAT 18668 ||| || ||| ||||||| | || ||||||||| | ||| | ||| |||||||| Sbjct 209399 TTAGAAGTCAGCATCCAAGGTGAAGGAATTCTCTG---TGGAACTGGCCATGACTCCCAT 209343 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | |||||||| | |||| || |||||||| || || ||||| |||| ||| ||| Sbjct 209342 CCTCTGATATTCTCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATT 209283 Query 18729 TTCCATAAAATCAAATGGATTTTTTAC 18755 |||||| || ||||||||||||| ||| Sbjct 209282 TTCCATGAAGTCAAATGGATTTTCTAC 209256 >seq4803 Length=331686 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | |||||| || | || || ||||| || || || || || || Sbjct 153628 TGAAATTCTCCTGACAATACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 153569 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 153568 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 153509 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 153508 TTTCTTATCCCATA 153495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| || | ||||| | |||||| || | Sbjct 157528 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCGTAGTTGGGTTCAGCAATATGGATGT 157469 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || ||||| || || |||||||| || |||||||| | | || | | Sbjct 157468 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 157409 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||| | ||| || | ||| || || Sbjct 157408 TCTGAGAGATTTCCCACACAGTCTTATAGAGTTGCTTCAGGTCATCAGG 157360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558176645179560