Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3787 123 2e-22 seq537433 118 8e-21 seq507799 100 2e-15 seq4911 98.7 8e-15 seq434954 96.9 3e-14 seq12905 96.9 3e-14 seq20595 87.8 1e-11 seq33851 86.0 5e-11 >seq3787 Length=754536 Score = 123 bits (136), Expect = 2e-22 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| || || |||||||| || || || || || Sbjct 58281 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGACAGGCAACA 58222 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||||| |||||||||||||| || ||| Sbjct 58221 AAAGATGCTGGAACTATTGCTGGCCTCAATGTACTTCGAATTATCAATGAACCAACGGCT 58162 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| | ||||| Sbjct 58161 GCTGCTATTGCGTATGGCTTAGATAA 58136 >seq537433 Length=909 Score = 118 bits (130), Expect = 8e-21 Identities = 360/542 (66%), Gaps = 21/542 (4%) Strand=Plus/Minus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTAC-TCCATCTTATGTTTCTTT 550107 || || ||||| ||| | | ||| || |||||| | || | | | || ||||| |||| Sbjct 821 AAGGTGGAAATAATTTCTAGTGACCAGGGTAACTGCACCATGTGGAACT-ATGTTGCTTT 763 Query 550108 CACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCT 550165 || || || ||||| | | |||| |||| || || | || | || || || | Sbjct 762 CATTGACACAGAACAATGAATTGGGGATGTGGCCAAGAAGCAGGTTGCAATG--AAGCAG 705 Query 550166 ACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTT 550225 ||||| || |||||||||| ||| || | || ||| || ||| ||||| | |||| Sbjct 704 ACCAACACAGTTTTTGATGCCAAATGTCTGATCGGACATAGATTTGATGATGCTGGTGTT 645 Query 550226 CAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATT 550285 || | || |||||||| ||||| || || || |||| | | || | ||| | | Sbjct 644 TAGTCTGACATGAAGCACTGGCCATTTATCATGGTAAATGATGCAGGCAGGCCTAAGGTC 585 Query 550286 GAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 ||| | | |||| | ||||| || | |||||| || | ||||| |||||| Sbjct 584 CAAGTTGAATACAAAGGGGCAAGAAAACATTTCTACCCAGAAGAAGTATCATCAATGGTT 525 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTG-CTTTTGTTGGTCAAGAA-GTTACGGATGCAG 550403 | | || ||| || || || ||| || | |||| ||||| |||| Sbjct 524 CTGACAAAGATGGAAGGAAATTGTAGAATCTTACCTTTGA-AAGACTGTTACCAATGCCA 466 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 || | || || ||||| ||||| ||||||| | | || || || |||| ||||||| Sbjct 465 TAGTCACAGTGCCAGC-TATTTCCATGACTCTCGGGGGCA-GCAACAAAAGTTGCTGGAA 408 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 ||||||||| || || || |||| ||||||||||| || |||| ||||| ||||| | Sbjct 407 CTATTGCTGGTCTCAAAGTACTTCAAATTATCAATGAGCCAACTGTGGCTGCTCTTGCTT 348 Query 550524 ATGGACTTGATAAACATAATGATCAAGAACT-----TAATGTACTCATCTTTGATTGTGG 550578 || |||| |||| | | | || |||||| ||||| || || ||||||| || Sbjct 347 AT-GACT---TAAATAAGAAGGTC-AGAACTAAAAGGAATGTGCTGATTTTTGATTTGGG 293 Query 550579 AG 550580 || Sbjct 292 AG 291 >seq507799 Length=571 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || || |||||||| || | || || || |||||| ||||| |||| Sbjct 160 ACAGTGCCAGCTTACTTCAATGACTCTCAGCAGCAGGCAACAAAAGATACTGGAACTATT 219 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || ||||| |||| |||||||||||||| | |||||||| |||| ||||| Sbjct 220 GCTGGCCTCAATGTACTTCCAATTATCAATGAACCAATGGCTGCTGCTATTGCTTATGGC 279 Query 550529 CTTGATAA 550536 | ||||| Sbjct 280 TTAGATAA 287 >seq4911 Length=248699 Score = 98.7 bits (108), Expect = 8e-15 Identities = 152/212 (72%), Gaps = 5/212 (2%) Strand=Plus/Minus Query 550044 ATGGTAAAGTTG-AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTT 550102 |||| ||||||| |||| |||| |||||| || |||||| || | ||| |||||| Sbjct 209895 ATGG-AAAGTTGGAAATAATTGACAATGACCAGGGTAACCTCACCATGCCAAGCTATGTT 209837 Query 550103 TCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTA 550160 ||||||| || || ||| ||| |||| |||||||| || ||| | || || | Sbjct 209836 GCTTTCACTGACACAGAATGATTAATTGGGGATGCAGCCAAGACTCAGGTTGCAATGA-A 209778 Query 550161 ATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGA 550220 || | ||| | |||||||||| |||| | | |||||| | || ||| ||||| | Sbjct 209777 CCCCAAGCAACAGATTTTTTGATGCCAAACATCTGATTGGATGTAGGTTTGATGATGCTG 209718 Query 550221 CTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 |||||| | ||||||||||| ||||| ||| Sbjct 209717 TTGTTCAATCTGATATGAAGCACTGGCCCTTC 209686 >seq434954 Length=317 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| || || ||||||||||| | || || || Sbjct 204 GTTACCAATGCTGTGGTCACAGTGCCAGCCTACTTCAATGACTCACAGTGGCAGGCAACA 145 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||| ||||||| ||||||||| || |||| |||| ||||||| |||||| | |||| Sbjct 144 AAAGGTGCTGGAACTATTGCTGGCCTCAATGCACTTCAAATTATCAGTGAACCAAATGCT 85 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| | | ||||| | ||||| Sbjct 84 GCTGCTATCACTTATGGCTTAGATAA 59 >seq12905 Length=164903 Score = 96.9 bits (106), Expect = 3e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| || || ||||| || || |||||||| || | || || || Sbjct 164585 GTTACCAATGCTGTATCCACAGTGCCAGCTTACTTCAATGACTCTCAGCACCAGGCAACA 164526 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||| ||| | ||||||||| || ||||| | || |||||||||||||| |||| | Sbjct 164525 AAAGATTCTGCAACTATTGCTGGCCTCAATGTACATCAAATTATCAATGAACCAACTGTT 164466 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 |||| |||| ||||| | ||||| Sbjct 164465 CCTGCTATTGCTTATGGCTTAGATAA 164440 >seq20595 Length=81188 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||| || || ||||| | ||||| ||||| || Sbjct 48166 GTTACCCATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAACGGCAAGCAACC 48225 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 ||||||||||| ||||||||| || ||||| | | || |||||||| || Sbjct 48226 AAAGATGCTGGCACTATTGCTGGGCTGAATGTCATGAGGATCATCAATGAGCC 48278 >seq33851 Length=59509 Score = 86.0 bits (94), Expect = 5e-11 Identities = 170/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||||| | ||||| || ||||| ||||| | || | | || || ||||| ||| Sbjct 24257 GATTTTGTTACCACCTACTAATGTGTGGGTGTCTTCCAGCAAGAAAAGGTGGAAATAATT 24316 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 ||| ||| || | |||| || | | | |||| ||||||| || || | || Sbjct 24317 ACCACTGAACAGGATAACCACACCATGACGAGCTCTGTTGCTTTCACTGACACAGGACGA 24376 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTTG 550181 ||| |||| |||| || | | |||| | || || || || ||||| || |||||| Sbjct 24377 TTAATTGGGGATGTGGCCACAAATCAGGGTGCAATG--AACCCCACCAACACAGTTTTTG 24434 Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241 |||| |||||| | || ||| | || ||| || || | ||||||| | |||||||||| Sbjct 24435 ATGCCAAACGTCTGATGGGACGTAGGTTTGATAATGCTGTTGTTCAGTCTGATATGAAGC 24494 Query 550242 ATTGGCCTTT 550251 | ||||| || Sbjct 24495 ACTGGCCCTT 24504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3999700294553210